GgaINT0128387 @ galGal3
Intron Retention
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:485566-486028:-
Coord C1 exon
chr18:485863-486028
Coord A exon
chr18:485691-485862
Coord C2 exon
chr18:485566-485690
Length
172 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
TTTTTCACTCTTCCCTGCAGAGG
3' ss Score
11.21
Exon sequences
Seq C1 exon
ATCCTGGCAGAGTGGAAGCAGAAGTACGAGGAAACGCAGGCTGAGCTGGAGGCCTCCCAGAAGGAGTCTCGCTCCCTCAGCACAGAGCTGTTTAAGATGAAGAATGCCTATGAGGAATCCCTGGACCACCTGGAAACGCTGAAGCGTGAGAACAAGAACTTGCAGC
Seq A exon
GTAAGTCGCTCAGTCTTTCCTGCTGGCAGGGCTTTCTCAGAAGCTTTCCTGCCCACCTCTCCACCTGGGTCTGTGCCTTCAGGGATGGGAGGAGACTTGTTATGCTGTTGTCACAGGGCCTTTCCCTGTATGCTCTGTATCTGACCATGCGATTTTTCACTCTTCCCTGCAG
Seq C2 exon
AGGAGATTTCTGACCTCACGGAGCAGATTGCAGAGGGAGGAAAGGCAATTCATGAGTTGGAGAAAGTCAAGAAGCAGATTGAGCAGGAGAAGTCTGAAATCCAGGCTGCTCTGGAAGAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800:ENSGALT00000001427:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.482 A=NA C2=0.452
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.4=100),PF0003816=Filament=FE(18.5=100),PF045827=Reo_sigmaC=FE(40.1=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.8=100),PF045827=Reo_sigmaC=PD(24.1=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGTACGAGGAAACGCA
R:
GCAGCCTGGATTTCAGACTTCT
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]