BtaINT0097277 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007090 | MYH2
Description
Bos taurus myosin, heavy chain 2, skeletal muscle, adult (MYH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166227]
Coordinates
chr19:30142591-30142980:-
Coord C1 exon
chr19:30142815-30142980
Coord A exon
chr19:30142716-30142814
Coord C2 exon
chr19:30142591-30142715
Length
99 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CCCGTCTTTCACCCAAACAGAGG
3' ss Score
7.78
Exon sequences
Seq C1 exon
ATCCTGGCAGAATGGAAACAGAAGTATGAGGAAACCCACGCCGAGCTCGAGGCAGCTCAGAAGGAGGCCCGCTCTCTGGGTACCGAGCTGTTCAAGATGAAGAATGCCTACGAGGAGTCCTTGGATCAGCTAGAAACTTTGAAACGAGAGAACAAAAACTTGCAGC
Seq A exon
GTGAGTCCCTTTCACTTTGAATAGTTTTCATGCCTTAGAGGTACCTTTCTCTTCTGTTTTCTGTCTGATCAAGTCTCTTCCCGTCTTTCACCCAAACAG
Seq C2 exon
AGGAGATCTCTGACCTCACGGAGCAGATCGCAGAAGGAGGGAAACGTATGCATGAACTGGAGAAAATAAAGAAGCAAGTGGAACAAGAAAAGTCTGAAATTCAGGCTGCTTTAGAGGAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007090:ENSBTAT00000012797:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.857
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.4=100),PF0003816=Filament=FE(18.6=100),PF045827=Reo_sigmaC=FE(37.2=100),PF060097=Laminin_II=FE(53.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.9=100),PF045827=Reo_sigmaC=PD(22.3=78.6),PF060097=Laminin_II=PD(14.7=35.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGAGTCCTTGGATCAGCT
R:
CTCTGCCTCCTCTAAAGCAGC
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]