RnoEX0056920 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53730698-53735166:+
Coord C1 exon
chr10:53730698-53730893
Coord A exon
chr10:53731846-53731964
Coord C2 exon
chr10:53735041-53735166
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTGGTTCTTCCGTTTCCCAGGTG
3' ss Score
10.18
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GCTATTCATTCTCTCCAGGCTTTGTCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGGAAACCTAGAGAAGATGTGCCGCACCCTGGAGGACCAGGTGAGTGAGCTGAAGTCGAAGGAGGAGGAACAACAGCGCCTGATCAACGACCTGACCACCCAGAGAGGACGCCTGCAGACCGAATCCG
Seq A exon
GTGAATTTTCCCGGCAGCTTGATGAGAAGGAAGCGCTGGTTTCTCAGTTATCAAGGGGCAAGCAAGCATTTACCCAACAGATTGAGGAGCTGAAGAGGCAGCTGGAAGAGGAAGTAAAG
Seq C2 exon
AACACCAGCCTCATCAACACCAAGAAGAAGCTGGAGACAGACATTTCCCAGATCCAGGGAGAGATGGAGGACATCGTCCAGGAAGCCCGCAATGCAGAAGAGAAGGCCAAGAAAGCCATCACTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX1-18/41=17-25
Average complexity
C3
Mappability confidence:
96%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=0.075 C2=0.667
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100)
A:
PF0157614=Myosin_tail_1=FE(4.5=100)
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGAGAAGATGTGCCGCACC
R:
GTCAGTGATGGCTTTCTTGGC
Band lengths:
247-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]