GgaEX6015734 @ galGal3

Exon Skipping

Gene

ENSGALG00000023800 | Q90900_CHICK

Description

NA

Coordinates

chr18:486708-487478:-

Coord C1 exon

chr18:487352-487478

Coord A exon

chr18:487134-487252

Coord C2 exon

chr18:486708-486904

Length

119 bp

Sequences

Splice sites

3' ss Seq

CTTTCTGTATGCTTTCCTAGGTG

3' ss Score

10.45

5' ss Seq

AAGGTGATA

5' ss Score

4.18

Exon sequences

Seq C1 exon

GCAAACCTGGAAAAGATGTGTCGTACTTTAGAAGACCAACTGAGTGAGATTAAGTCAAAGGAGGAGGAGCATCAACGCATGATAAACGATCTCAGCACTCAAAGAGCTCGTCTGCAGACAGAATCAG

Seq A exon

GTGAATATTCACGCCAGGTGGAGGAGAAAGATGCCCTGATATCTCAGCTGTCTCGAGGCAAGCAGGCATTCACCCAACAGATTGAGGAACTCAAGCGGCACTTAGAGGAAGAAATCAAG

Seq C2 exon

GCCAAGAACGCCCTGGCCCACGCCTTGCAGTCTGCTCGTCATGACTGTGATTTGCTCCGGGAACAATATGAAGAGGAGCAGGAAGCCAAGGGTGAGCTGCAGCGTGCCCTGTCCAAGGCCAACAGTGAAGTGGCCCAGTGGAGAACCAAATATGAGACAGATGCTATTCAGCGCACAGAGGAACTGGAGGAGGCCAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000023800-'28-29,'28-28,29-29=AN

Average complexity

A_S

Mappability confidence:

100%=75=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.814 A=0.300 C2=0.409

Domain overlap (PFAM):

C1:

PF0003816=Filament=FE(14.7=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF045827=Reo_sigmaC=FE(28.8=100),PF0003816=Filament=PU(25.0=53.5)

A:

PF0003816=Filament=PD(4.5=32.5),PF0157614=Myosin_tail_1=FE(4.5=100),PF045827=Reo_sigmaC=FE(26.7=100),PF0003816=Filament=FE(42.4=100),PF0003816=Filament=PU(12.1=90.0)

C2:

PF0157614=Myosin_tail_1=FE(7.5=100),PF045827=Reo_sigmaC=PD(11.0=24.2),PF0003816=Filament=PD(30.4=42.4),PF0003816=Filament=FE(21.9=100)

Main Inclusion Isoform:

ENSGALP00000001419