MmuEX7034394 @ mm10
Exon Skipping
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:67190307-67191795:+
Coord C1 exon
chr11:67190307-67190433
Coord A exon
chr11:67191348-67191466
Coord C2 exon
chr11:67191599-67191795
Length
119 bp
Sequences
Splice sites
3' ss Seq
CGGTTTCTTCTGTTTCCCAGGTG
3' ss Score
10.1
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GGAAACCTCGAGAAGATGTGCCGCACCCTGGAGGACCAGGTGAGTGAGCTGAAGTCAAAGGAGGAGGAACAGCAGCGACTGATCAACGACCTGACAACCCAGAGAGGACGACTGCAGACCGAATCCG
Seq A exon
GTGAATTTTCCAGGCAGCTTGATGAGAAGGAAGCGCTGGTATCTCAGTTATCAAGGGGGAAGCAAGCATTCACTCAACAGATTGAGGAGCTAAAGAGGCAGCTTGAAGAGGAAGTAAAG
Seq C2 exon
GCCAAGAACGCGCTGGCCCACGCCCTGCAGTCCTCCCGCCATGACTGTGACCTGCTGCGGGAACAGTACGAGGAGGAGCAGGAGTCTAAGGCTGAACTGCAGAGGGCGCTGTCCAAGGCCAACAGCGAGGTGGCCCAGTGGAGGACCAAATATGAGACGGATGCCATCCAGCGCACGGAGGAGCTGGAGGAAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196-'20-38,'20-27,31-38=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.977 A=0.175 C2=0.424
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(14.7=100),PF0157614=Myosin_tail_1=FE(4.9=100)
A:
PF0003816=Filament=PD(4.9=35.0),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=PU(10.5=75.0)
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(22.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACGACCTGACAACCCAGA
R:
TTGGCTTCCTCCAGCTCCTC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types