RnoEX0056939 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53722319-53735412:+
Coord C1 exon
chr10:53722319-53722398
Coord A exon
chr10:53723902-53723989
Coord C2 exon
chr10:53735242-53735412
Length
88 bp
Sequences
Splice sites
3' ss Seq
AAAGTTTCCTGCTCTTACAGGAG
3' ss Score
8.06
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGGCAAGTAGTGGTGGAGCTGCCAAGAAAGGTGCTAAGAAGAAAGGGTCCTCCTTCCAGACAGTGTCTGCCCTGTTCAGA
Seq A exon
GAGAACTTGAACAAGCTGATGACCAACCTCAGGAGCACCCACCCTCATTTTGTGAGGTGTATCATCCCCAATGAAACCAAGACACCTG
Seq C2 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCATCTGGAGCGGATGAAGAAGAACATGGAGCAGACGGTGAAGGACCTGCAACTGCGTCTGGACGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX1-7/41=6-26
Average complexity
C2
Mappability confidence:
93%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.596
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(13.3=100)
A:
PF0006316=Myosin_head=FE(14.9=100)
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTGTCTGCCCTGTTCAG
R:
TTCTGGATCTGCTTCTTGCCG
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]