MmuEX7034395 @ mm10
Exon Skipping
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:67181983-67183807:+
Coord C1 exon
chr11:67181983-67182062
Coord A exon
chr11:67183516-67183603
Coord C2 exon
chr11:67183690-67183807
Length
88 bp
Sequences
Splice sites
3' ss Seq
AAAGTTCTCTGCTCTTACAGGAG
3' ss Score
8.08
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGGCAAGTAGTGGTGGAGCTGCCAAGAAAGGTGCCAAGAAGAAGGGGTCCTCTTTTCAGACCGTGTCTGCCCTGTTCAGA
Seq A exon
GAGAATTTGAACAAGCTGATGACCAATCTCAGGAGCACCCATCCTCATTTCGTGAGGTGTATCATCCCCAATGAAACCAAGACTCCCG
Seq C2 exon
GTGCCATGGAGCACGAACTGGTCCTGCACCAGCTGAGGTGTAACGGGGTGCTGGAGGGCATCCGCATCTGCAGAAAGGGCTTCCCCAGCAGGATCCTCTATGCAGACTTCAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196-'9-27,'9-16,20-27=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.8=100)
A:
PF0006316=Myosin_head=FE(4.2=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCAAGAAAGGTGCCAAGA
R:
CTGCATAGAGGATCCTGCTGG
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types