RnoEX0056926 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53733727-53735166:+
Coord C1 exon
chr10:53733727-53734035
Coord A exon
chr10:53734120-53734323
Coord C2 exon
chr10:53735041-53735166
Length
204 bp
Sequences
Splice sites
3' ss Seq
AATGATTGTTCACTGCACAGGAC
3' ss Score
6.04
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GCATCTCTGGAGCACGAGGAGGGAAAGATCCTGCGCATCCAGCTGGAGCTGAACCAAGTCAAGTCTGAGATCGACAGGAAGATTGCTGAGAAGGATGAGGAGATCGACCAGCTGAAGAGAAACCACATTCGAGTCGTGGAGTCCATGCAAAGCACGCTGGACGCCGAGATCAGGAGCAGGAACGACGCCATCAGGATCAAGAAGAAGATGGAGGGAGATCTCAATGAGATGGAAATCCAGCTGAACCACGCCAACCGCATGGCTGCTGAGGCCCTGAGAAACTACAGGAACACCCAAGGCATCCTCAAG
Seq A exon
GACACCCAGCTGCACCTGGATGACGCTCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCCATGGTGGAGCGCAGAGCCAACCTGCTGCAGGCTGAGATCGAGGAGCTGCGGGCCACTCTGGAGCAGACTGAGAGGAGCAGGAAGATTGCAGAGCAGGAACTGCTGGACGCCAGTGAGCGCGTGCAGCTCCTCCACACCCAG
Seq C2 exon
AACACCAGCCTCATCAACACCAAGAAGAAGCTGGAGACAGACATTTCCCAGATCCAGGGAGAGATGGAGGACATCGTCCAGGAAGCCCGCAATGCAGAAGAGAAGGCCAAGAAAGCCATCACTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX1-24/41=23-25
Average complexity
S
Mappability confidence:
96%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.338 C2=0.667
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100)
A:
PF0157614=Myosin_tail_1=FE(7.8=100)
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGGAGATCGACCAGCT
R:
ACGATGTCCTCCATCTCTCCC
Band lengths:
294-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]