RnoEX0056921 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53718868-53735412:+
Coord C1 exon
chr10:53718868-53718971
Coord A exon
chr10:53719406-53719544
Coord C2 exon
chr10:53735242-53735412
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATCTTGATTTTTGTTGGCAGAGT
3' ss Score
6.21
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
AAATGCTGCTGATCACCACAAACCCATACGATTACCCATTCGTCAGTCAAGGGGAGATCAGTGTGGCCAGCATTGATGACCAGGAAGAACTGATGGCCACGGAT
Seq A exon
AGTGCTATTGACATTCTGGGCTTTACAAATGATGAAAAGGTCTCCATCTATAAGCTCACGGGAGCTGTGATGCATTATGGGAACATGAAGTTCAAGCAGAAGCAGCGGGAAGAACAGGCTGAGCCGGATGGCACGGAAG
Seq C2 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCATCTGGAGCGGATGAAGAAGAACATGGAGCAGACGGTGAAGGACCTGCAACTGCGTCTGGACGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX1-2/41=1-26
Average complexity
C2
Mappability confidence:
95%=100=90%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.277 C2=0.596
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
PF0006316=Myosin_head=FE(10.2=100)
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGATCACCACAAACCCA
R:
TTCTGGATCTGCTTCTTGCCG
Band lengths:
257-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]