HsaEX6021063 @ hg38
Exon Skipping
Gene
ENSG00000125414 | MYH2
Description
myosin heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:7572]
Coordinates
chr17:10539444-10540697:-
Coord C1 exon
chr17:10540594-10540697
Coord A exon
chr17:10539928-10540066
Coord C2 exon
chr17:10539444-10539562
Length
139 bp
Sequences
Splice sites
3' ss Seq
CCTATTGGTTATATTGACAGAGT
3' ss Score
3.07
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
AAATGCTTCTGATTACCACGAACCCATATGATTACCCATTTGTCAGTCAAGGGGAGATCAGTGTGGCCAGCATCGATGATCAGGAAGAACTGATGGCCACAGAT
Seq A exon
AGTGCTATTGATATTTTGGGCTTTACTAATGAAGAAAAGGTCTCCATTTACAAGCTCACGGGGGCTGTGATGCATTATGGGAACCTAAAATTTAAGCAAAAGCAGCGTGAGGAGCAAGCAGAGCCAGATGGCACAGAAG
Seq C2 exon
TTGCTGACAAGGCGGCCTACCTCCAGAGTCTGAACTCTGCAGATCTGCTCAAAGCTCTCTGCTACCCCAGGGTCAAGGTCGGCAATGAGTATGTCACCAAAGGCCAGACTGTAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125414-'15-15,'15-14,16-15
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.277 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
PF0006316=Myosin_head=FE(6.7=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCTGATTACCACGAACCC
R:
GTTCTACAGTCTGGCCTTTGGT
Band lengths:
218-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains