GgaEX6015731 @ galGal3
Exon Skipping
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:494278-495905:-
Coord C1 exon
chr18:495802-495905
Coord A exon
chr18:495586-495724
Coord C2 exon
chr18:494278-494396
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTTTATATTTTCTGTTGTAGAGT
3' ss Score
10.73
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
ACATGCTTCTAATTACCACCAATCCATACGACTATCACTTTGTGAGTCAAGGTGAGATCACTGTTCCCAGCATTAATGATCAAGAGGAGCTGATGGCTACAGAT
Seq A exon
AGTGCCATTGACATCCTGGGCTTTACTGCCGATGAAAAAGTGGCTATTTACAAGCTGACAGGAGCTGTCATGCACTATGGCAACCTGAAGTTCAAGCAGAAACAAAGAGAAGAGCAAGCAGAGCCAGATGGCACAGAAG
Seq C2 exon
TTGCAGACAAGGCTGCCTACCTGATGGGTCTGAACTCAGCAGACCTGCTCAAGGCCCTGTGCTATCCTCGTGTCAAGGTTGGGAATGAGTACGTGACCAAGGGTCAAACTGTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.213 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
PF0006316=Myosin_head=FE(6.7=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCTTCTAATTACCACCAATCCA
R:
CTGCACAGTTTGACCCTTGGT
Band lengths:
220-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]