MmuEX6086272 @ mm9
Exon Skipping
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:66994537-66997105:+
Coord C1 exon
chr11:66994537-66994846
Coord A exon
chr11:66995485-66995564
Coord C2 exon
chr11:66997018-66997105
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTATTCTTTTTCTTCCTCAGAGG
3' ss Score
10.99
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
CCGATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCTAAGGCGACAGACACCTCCTTCAAGAACAAGCTGTATGAGCAGCATCTTGGAAAGTCTGCCAACTTCCAGAAGCCTAAGGTGGTCAAAGGCAAGGCCGAAGCCCACTTCTCCCTCATCCACTATGCGGGCACCGTGGATTACAACATCACTGGCTGGCTGGACAAGAACAAGGACCCACTGAACGAGACCGTGGTGGGGCTGTACCAGAAGTCTTCAGTGAAAACTCTGGCTTATCTCTTCTCTGGGGCACAAACTGCTGAAGCAG
Seq A exon
AGGCAAGTAGTGGTGGAGCTGCCAAGAAAGGTGCCAAGAAGAAGGGGTCCTCTTTTCAGACCGTGTCTGCCCTGTTCAGA
Seq C2 exon
GAGAATTTGAACAAGCTGATGACCAATCTCAGGAGCACCCATCCTCATTTCGTGAGGTGTATCATCCCCAATGAAACCAAGACTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.259 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.0=100)
A:
PF0006316=Myosin_head=FE(3.8=100)
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCACCGTGGATTACAACAT
R:
ATGGGTGCTCCTGAGATTGGT
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: