GgaEX6015733 @ galGal3

Exon Skipping

Gene

ENSGALG00000023800 | Q90900_CHICK

Description

NA

Coordinates

chr18:487134-488110:-

Coord C1 exon

chr18:487721-488110

Coord A exon

chr18:487352-487478

Coord C2 exon

chr18:487134-487252

Length

127 bp

Sequences

Splice sites

3' ss Seq

ATTCTTCTTGAACTCCTCAGGCA

3' ss Score

5.81

5' ss Seq

CAGGTGAGA

5' ss Score

9.22

Exon sequences

Seq C1 exon

GCCCGTATTGAGGAACTGGAGGAGGAAATCGAGGCAGAGCGAACCTCTCGGGCAAAAGCAGAGAAGCACCGAGCTGACCTCTCCAGGGAGCTGGAGGAGATCAGTGAGCGCCTGGAGGAAGCAGGAGGGGCTACAGCAGCTCAGATTGATATGAACAAGAAGCGTGAGGCAGAATTTCAGAAGATGCGCCGTGACCTCGAAGAGGCCACGCTGCAGCACGAAGCCACGGCTGCTGCCCTGCGGAAGAAGCATGCGGACAGCACAGCGGAGCTTGGGGAGCAGATCGACAACCTGCAACGTGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTGAAGATGGAGATTGATGACTTGGCCAGCAACATGGAGTCTGTCTCCAAAGCTAAG

Seq A exon

GCAAACCTGGAAAAGATGTGTCGTACTTTAGAAGACCAACTGAGTGAGATTAAGTCAAAGGAGGAGGAGCATCAACGCATGATAAACGATCTCAGCACTCAAAGAGCTCGTCTGCAGACAGAATCAG

Seq C2 exon

GTGAATATTCACGCCAGGTGGAGGAGAAAGATGCCCTGATATCTCAGCTGTCTCGAGGCAAGCAGGCATTCACCCAACAGATTGAGGAACTCAAGCGGCACTTAGAGGAAGAAATCAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000023800-'27-28,'27-27,28-28=AN

Average complexity

A_S

Mappability confidence:

50%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.962 A=0.814 C2=0.300

Domain overlap (PFAM):

C1:

PF0003816=Filament=FE(45.1=100),PF0157614=Myosin_tail_1=FE(15.0=100),PF045827=Reo_sigmaC=PU(31.5=35.4)

A:

PF0003816=Filament=FE(14.7=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF045827=Reo_sigmaC=FE(28.8=100),PF0003816=Filament=PU(25.0=53.5)

C2:

PF0003816=Filament=PD(4.5=32.5),PF0157614=Myosin_tail_1=FE(4.5=100),PF045827=Reo_sigmaC=FE(26.7=100),PF0003816=Filament=FE(42.4=100),PF0003816=Filament=PU(12.1=90.0)

Main Inclusion Isoform:

ENSGALP00000001419