GgaINT0129134 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7936109-7936523:-
Coord C1 exon
chr18:7936365-7936523
Coord A exon
chr18:7936210-7936364
Coord C2 exon
chr18:7936109-7936209
Length
155 bp
Sequences
Splice sites
5' ss Seq
TAGGTACCC
5' ss Score
5.35
3' ss Seq
TTTTCCCCCCATCCCTGCAGATA
3' ss Score
12.22
Exon sequences
Seq C1 exon
GGATAAAACTGGAGGCACTGGACACCGAGAGAGCCTTGGAGGAAGCCGGGATTTTGAATGATGAGATTATAGGAGTTGTATTTAAAAACAACTTCTCCTATCACCTCCGGTTTCCTGCTGGGAACGTGGTTTTTCCAAATGAAAACCTTGAATATATAG
Seq A exon
GTACCCAGTTGTTTTCTGATGCTGTTTGATGCTCTTATTATAATGTTGGTTTTTTTACACTATTGATTCCTGCAGAGGATCTTAATCTTGTTTTGCTCTTCTATTACATCAGTTGTGTATGTATGAGTGATGCCCTTTTCCCCCCATCCCTGCAG
Seq C2 exon
ATACCTGTTACAATTACTCAGGGCAGTACTGCGAGAGCCCCAAGTACTGGTACAAAGGTTTCCTGTCCCTGCAGTCCAGCATTGATGCTGCTATTATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.8=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGGAGGCACTGGACAC
R:
CATCAATGCTGGACTGCAGGG
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]