GgaINT0129344 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:400169-400984:-
Coord C1 exon
chr18:400828-400984
Coord A exon
chr18:400197-400827
Coord C2 exon
chr18:400169-400196
Length
631 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCCTTTTGCCTCTTTCACAGACC
3' ss Score
10.19
Exon sequences
Seq C1 exon
ACCTACTCGGGCCTCTTCTGTGTCACTGTCAACCCCTACAAGTGGCTGCCGGTGTACAACCCGGAGGTGGTGTTGGCCTACCGAGGCAAAAAGCGCCAGGAGGCCCCTCCACACATTTTCTCCATCTCTGACAACGCCTATCAGTTCATGCTGACTG
Seq A exon
GTGAGTGCCTGATCTCCTTCAAAGCAACCTGAACTGAAGAGCCTCATTGCTCTTACTGGACTATGTGACAAACCAGCACCAAACACCACACAGCTGTATGACAGCAAGTGGAAGAGGAATTCATGTTAAGACAAACTGTGCCAGATACACACATAGATTCAGCACTGTGTGCTATTTACCAATATTGTAGTTATATTGTATATATTATATTATATATATATATGTATATATTATATGTTATATTGCAATATTGTATTGTACCAAATCCTACACTTTCCTAGTGCAGATGTAAAGCTGGACTTGGAGTTTGTTACTATTTTGCAGTGATGGAAGAGAAAGCATTATTGTTCTAGACAGTTGTTTACTTTGAACACAGGTAGGCATTTGGTCTAGATTCCTTGACTCTAGAACTGTGTGAAGGGCAAGAGGACACGCAGTTTGTGTGAGGACCATGTGCCTCTGACAGCTGTATTCCTCCATTTGTGCTGCTACTGTGGAATACAGAAGCAAATCCATTTTTCTTCCCTGGGAATTAGTGCTTCTGGAGAAGCTCCAACTTACAGCTTTACTTTTAAGGTAGCTCAGTGCTACTCAGGACAATGGTTAAACTTTCCTTTTGCCTCTTTCACAG
Seq C2 exon
ACCGCGAGAATCAGTCGATCCTGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]