MmuINT0103523 @ mm9
Intron Retention
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67054896-67055670:+
Coord C1 exon
chr11:67054896-67055052
Coord A exon
chr11:67055053-67055642
Coord C2 exon
chr11:67055643-67055670
Length
590 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
GTGGTTTCTTCCCTTCGCAGATC
3' ss Score
11.79
Exon sequences
Seq C1 exon
ACTTACTCAGGCCTCTTTTGTGTCACCGTCAACCCCTACAAGTGGCTGCCGGTGTACAACCCTGAGGTGGTGGCAGCCTACCGAGGCAAAAAGCGCCAGGAGGCCCCACCCCACATCTTCTCCATCTCTGATAACGCCTACCAGTTCATGCTGACGG
Seq A exon
GTGAGTATACCCATAATCACAACCTCTACAAGCACTAGAAAACACTTGTAGACTCAGCACAGAGAACATGTGGCCAGCTCCTTGAGAAAGAGATGCTTTGCACATGTGATAAGAGCAAGAAGAGTGGAAAAACTGATTAAGAGTGTGATGCACCGATTATAAACGTATAGGGAAATTTGCTTAGACGTCTATGCTAAAATCCAAATTGGTTGATGCTCATTTCAGTTCAATTTGATCACAGTTAGGTATCAGCTCTGCATCTTAATTACATCTACTGTATTATCTCATTTTAAAAAGTAAGCTTTGAAATTTTATAAGCACTACAGGGCATGCAGCCACTTGGCCATACAAAACACAACAGGATTTTGAACTATGATCCAGGTAAAAGAAGGAGACGTGGAACTGTTAGGCCACCTGTATTTGTAAGAGAGTGGGCTGGTGCATCCCATAATCCTCCACATTAAAGATGACACCAGTGTGATAATTAGCACACCTTCCACACTTAGTTCCCAAGACTTGTGAGAAGAAGAAGAACACAGCTTTAGCAGCGTCTGTGCTTTTGTTTACCCTGTGGTTTCTTCCCTTCGCAG
Seq C2 exon
ATCGTGAGAATCAGTCCATCCTGATTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-Myh4:NM_010855:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: