GgaINT0129354 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:395238-396519:-
Coord C1 exon
chr18:396349-396519
Coord A exon
chr18:395545-396348
Coord C2 exon
chr18:395238-395544
Length
804 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TTTCCCTTTGCTTCTCCCAGCCC
3' ss Score
8.36
Exon sequences
Seq C1 exon
TTCAACAGTCTGGAACAGCTGTGCATCAACTTCACGAATGAGAAACTGCAACAGTTCTTCAACCACCACATGTTTGTGCTGGAACAGGAGGAGTACAAGAAGGAAGGCATTGAGTGGGAGTTCATTGACTTTGGGATGGACTTGGCTGCCTGCATTGAGCTCATTGAAAAG
Seq A exon
GTATCTTCTAATTCACAATGTCTAATACAGAAGAATAATAAAATCATAGAATTATAGGATTATAGAAAGATAGAATATCTTGAGTCAGAAGGGACCCTAAAGTCCAGTCAGTTCCAAACCCCTGCCATGGGTAGGGTTATCTTCTACTAGATCAGACTGTCCAGGGTCTCATCCAGCCTGGCCTTGAACATATTCTTGTATGGGGCATCTACAGCTTCCCTGGACAGTCAGCCACCACCCTCTGAGTAAAAAATTTCTTTCTAGCATCTAATCTTATTTTAGTTAAAACAGTTCCCCTTTGTCCTATTACTATCAGACCACATAAAAAGTCACTTTCCATTTTATTTATAAGCTCCCTTTAAATATTGAGAGGCTGCAGTAATGTGTCCTCAGAGCCTTCTCTTCTCCAGGCCAGCTCCCTGAACAAACACTGCTCCCTCAGCCTTTCTACACAAGAGTGATGCTACAGCCCTCTGAGCATCTTCATGTTCCTGCCCTGGACAGGCACCAGCAGGGTACACACCAACAGGCCACCTCCTTGTACTAAAGCCCCAGGCCTAGATGAAGTACTCCAGATGGGGCTTCACAAGGGCAAAGTAGGGGGACAAACACCTCCCTTTACCTGCTGGCAACCCTTCTTTTGATGCAACGTAGGATATAATTTCACAACTTGCTCTGTTGAGCAGAAGTATTTTACTTTAAAAGCCATGGGAGTTTTAATATCATCCCATTCAGGAAGCTGCTTCTCTATCTATGATTCTTGTTCCCTTTTCATTTCTTTCTCTTTCCCTTTGCTTCTCCCAG
Seq C2 exon
CCCATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCAACTGACACCTCTTTCAAGAACAAGCTCTATGACCAGCATCTGGGCAAGTCCAACAACTTCCAGAAGCCTAAACCTGGCAAAGGCAAGGCTGAGGCCCACTTCTCCCTGGTGCACTATGCTGGCACAGTGGACTACAACATCTCTGGCTGGCTTGACAAGAACAAGGACCCCCTGAATGAAACTGTTGTGGGGCTGTACCAAAAATCATCCCTGAAGACACTGGCCTTACTGTTTGCTTCTGCTGGCGGAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGGCATTGAGTGGGAGT
R:
AAGGCCAGTGTCTTCAGGGAT
Band lengths:
349-1153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]