MmuINT0103496 @ mm9
Intron Retention
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67059873-67062257:+
Coord C1 exon
chr11:67059873-67060043
Coord A exon
chr11:67060044-67061947
Coord C2 exon
chr11:67061948-67062257
Length
1904 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TCTCCCTTTTTAATATCCAGCCG
3' ss Score
7.31
Exon sequences
Seq C1 exon
TTCAACACCTTGGAGCAGCTGTGCATCAACTTCACCAATGAGAAACTGCAACAGTTTTTCAACCACCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGAAGGAGGGCATTGATTGGGAGTTCATTGACTTCGGGATGGACCTGGCGGCCTGCATCGAGCTCATCGAGAAG
Seq A exon
GTTTGTGTGGCTTTCAAAACTTCAGAACAGGCACAAAGCGTGTCCTCCTTTCTATGTTTACTTACAATCTCAGCTCTCAAAGGGTAGGCAGTGGCACCTCTTGACAAGATTGTGTGCTCTTATCAGTTCGAAGGCATGTCATGAGCAATCTGTTACTAATGAAAAAAGTAGAGTAGTCTCCAGGAAAGAAAAAATAGCACACATGGATTCACATTTTCATCTCTTATAACTTCATGCTTCCTTGGTTTTTTAATGACATAGGGTCTCCCTATGTGACCTTCACTGGCCTTGGAACTCACTATGTAGAACCAGGCCAACCTTGAACTCACAGAGATCCTCCTCTTTCTGTCTTCTGAGTGCTTAAAGGCACATAGAACCATACATGGGCTTTCTTATTCCTCATTTATTATTCCTACATGATTTTATACATATGGAAAGAATGGATGAAAGTACAGCCAGTCCTCTGAATAGTTAATTATTACTAGTATGGCTATGCTGTTGCATTGTGCTTGTAACCAACCTCCCGTGTGTTCTGTATAACAGGGCATTGTATAGTAAGATGCTTAAGGTTGGGGAGTTAATTGTTGAATCTATCAATTTATCTCTTACTCATGATTACTATCCAGTAAATATACGAAACTTCCATTTGACTTTACCTTCGGAATGAGCTCTGAATTCTCTATTAGTAATTAAGGGAATTAGTCATTAAGGAAATCTGTCCAATTAAGTTGGAGCAACAGATGTATCATATTTTGATAGAAATCATTGAACAACTTCAACGTTCAGAACTGTTAGGATCCTGGGACTGGAGAGATGGCTCAGTGGTTTCAGAGTGCTTGTTGCGATATCATGAGGTCTGGAATTGTGATTCCAGTATCCACATCAAGTGGCTCACAAACACCTGGAACACCAGCACCAAGGAATCCTCCATCCTTTTCTGGTTTCCACAAGCCTTCAAGCATATATACACACATGCATTCTCTCATACATGCACATGCACACACACAAAATGCCACACATTGTCATGTGCCTTTTGGTACCAAGAAAGAACCTACGTGGAATCTCCCTAAGCAATAACAAAGGAGAAATAAAATGGAATCATCATCTAGGAAAATTTCAAATACTCAGCTCAAAATGTACAAACATAGAAAAGTAAAACCCTAGGTAGCACAACTTAGGCAAATGTGTTAATCCTTCCACTGCTCATCAAAACTATGCAGGCTCCAGAAAAAGCATTTACTTCCTTCATGAGTATTTCAACTTCTGGATTATCAAAACAGTTTTTGAGGTTGAATTTGTGAGTTTGGAGAGTCATCAATGCTAAATTTGCTTTTAGTCTCCTGTATCAAATTTGTCTCAGAAAAATCAGACTGCTTTGTGAGCAAAACCTGATGGATCACCAGTCCTTAATTCCACAGACATGGGAGAAGGGCTGAAAGTACAAAGAGTTTCCATGAGGCAACATGAGATGCACTTTCTTCTTGATGAAGTTTCATTCCCGTTCATCAGACACACAGCCTCTCCTTTTCCCATCTTTTCCATCGGTTGTGGTCAAGGATGTTACATTGTGAGAAGGAGTATATCAGAGTACATATGCATTTGTAGGGTAAAAATCAAGCTTTAGAATTTCATCTTACATACTGAACACATTTGCCAGATGGTCCAGATGGGCTTTTAAACTAAGTCTTTCAGCAAAGTATATGCGTTCCTATGCATTCTTCAGATGATGATGGTCGTATTTTGTTAGAAGAGGGGAATGATGAGATAAGATGTCATCTGTTTAGGCATAATTCCAAGTTCTTCCTTTAGAATGCCTCCTTTTCAAGTTTGTACCAATCACACAAATTACCAGAGCATAATTTTCTAAGGGACCCATCGCTATCTTCTCCCTTTTTAATATCCAG
Seq C2 exon
CCGATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCTAAGGCGACAGACACCTCCTTCAAGAACAAGCTGTATGAGCAGCATCTTGGAAAGTCCAACAACTTCCAGAAGCCCAAACCCGCCAAAGGCAAGGCTGAGGCTCACTTCTCCCTGGTGCACTATGCGGGCACCGTGGACTACAACATTATTGGCTGGCTGGACAAGAACAAGGACCCCCTGAATGAGACCGTGGTGGGGCTGTACCAGAAATCCGGGTTGAAGACTCTGGCTTTCCTATTTTCTGGGGGACAAGCTGCGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-Myh4:NM_010855:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGCATCAACTTCACCA
R:
AATGTTGTAGTCCACGGTGCC
Band lengths:
347-2251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: