GgaINT0129364 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:390538-390862:-
Coord C1 exon
chr18:390717-390862
Coord A exon
chr18:390629-390716
Coord C2 exon
chr18:390538-390628
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CCATGTATCTTGTGCAAAAGGAA
3' ss Score
2.66
Exon sequences
Seq C1 exon
CTGGAAGGGTCCCTGGAGCAAGAGAAGAAGCTGCGCATGGACCTCGAGAGAGCTAAGAGGAAACTTGAAGGAGACCTGAAGTTGGCCCATGATAGCATAATGGACTTGGAAAATGATAAACAGCAGCTGGATGAGAAACTGAAGAA
Seq A exon
GTAAGTGAGGTTGTGGGACATCTGAGTGCTGGATGGGTACACTTAGATGTTTTGTTCAGGCACTAACACCATGTATCTTGTGCAAAAG
Seq C2 exon
GAAAGACTTTGAAATCAGCCAGATCCAGAGCAAAATTGAGGATGAGCAAGCCCTGGGCATGCAGTTACAGAAGAAGATCAAGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=NA C2=0.419
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(1.0=4.1),PF135141=AAA_27=FE(6.4=100),PF0157614=Myosin_tail_1=PD(24.2=65.3),PF0003816=Filament=FE(16.3=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF135141=AAA_27=FE(4.0=100),PF0003816=Filament=FE(10.2=100),PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAAGAAGCTGCGCATGG
R:
CAGGGCTTGCTCATCCTCAAT
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]