MmuINT0103507 @ mm9
Intron Retention
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67066057-67066565:+
Coord C1 exon
chr11:67066057-67066202
Coord A exon
chr11:67066203-67066474
Coord C2 exon
chr11:67066475-67066565
Length
272 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
ATGTGCTGCTGTTAAACTAGGAA
3' ss Score
5.61
Exon sequences
Seq C1 exon
CTTGAAGGATCACTGGAACAGGAAAAGAAGCTGAGGATGGACTTAGAAAGAGCCAAGAGGAAACTGGAGGGGGACCTGAAACTGGCCCAAGAGTCCACAATGGACATAGAAAACGATAAACAGCAGCTCGATGAGAAACTCAAAAA
Seq A exon
GTAAGCGTTATAGGATTCAGCCCTGACTTCTCACTGTGTGGGTGCAGGGGAAACACGGGTTTGAGTGTTTCCAAATGATTGCTTCATCATATTTGGGGTGAAATAAACAAGGGCCAGCTTTAAAAATATTTAATTAAAATGGCACTGGGTAGATTTGTAAAACATGTGTTTCTCTCTATTTTAAGGCAATCAGTATAAAAAGTTCAATTATGCATAGGTAGGAAGGCTGGGGGAAGAATTAACCATGAGCTAATGTGCTGCTGTTAAACTAG
Seq C2 exon
GAAAGAGTTTGAAATGAGCAATCTGCAGAGCAAGATTGAGGACGAGCAGGCCCTCGGCATGCAGCTGCAGAAGAAGATCAAGGAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-Myh4:NM_010855:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.918 A=NA C2=0.677
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(25.4=69.4),PF087025=Fib_alpha=FE(41.4=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF087025=Fib_alpha=FE(25.9=100),PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAGGAAAAGAAGCTGAGG
R:
AACTCCTTGATCTTCTTCTGCAGC
Band lengths:
220-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: