GgaINT0130567 @ galGal3
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8090372-8090945:-
Coord C1 exon
chr19:8090869-8090945
Coord A exon
chr19:8090463-8090868
Coord C2 exon
chr19:8090372-8090462
Length
406 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
AGTGCTTGATTATATTGCAGGTA
3' ss Score
6.27
Exon sequences
Seq C1 exon
AGGACTGCTTCGAGGTGACCAGAGATGCAATGTTTCACTTGGGCATTGACCACTCCACGCAGAACAATATTTTCAAG
Seq A exon
GTCAGGTACAATGCATGGTCACCACAAAGCTCATGACAATATTTGTCATGTCTTTTTAGCACTGGGATTTCTACAGAAGCAAATCTGTATCCATGTCCAGAGCATGGGTTGTTTGGTATTCATTGCAGCAATGCTGCCTGAAATGCCTGCAGCTACGCATTAGGTTGCATAACCAAATATTAGTTTTTAACCAAAAGCCCACACCTGTGAACTGTAGATTTCTTTCAGTAATGCTGCATGAGGAATTACTGTAGGAACTCGGAATCTACTTCCTTTCTGTTGGTTTTTTGTTTGTTTGTTTTGTACAGAAATGTCTTGATTTGCCCTGTTCATATGGCAAGGCCAAGAGGACACTGCCTCGGAGGAGAGCTCTGTTTTAAAAACTCAGTGCTTGATTATATTGCAG
Seq C2 exon
GTATTGTCAGGCCTTCTCCATCTTGGGAACATTCAATTCTCTAATCCAGTGGATGAATCTCAGCCTTGTGAACTAGAAGATAAAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]