HsaINT1024252 @ hg38
Intron Retention
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36511365-36513505:-
Coord C1 exon
chr17:36513429-36513505
Coord A exon
chr17:36511456-36513428
Coord C2 exon
chr17:36511365-36511455
Length
1973 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
CATCCTTTTCTTTCCCCCAGGTC
3' ss Score
13.79
Exon sequences
Seq C1 exon
AGGATTGTTTTGAGGTGACCAGAGAGGCCATGCTCCATTTGGGCATTGACACCCCTACCCAGAACAACATCTTTAAG
Seq A exon
GTCAGAAGAAAAGCCACGCCACTTAAGTTTGGCAGAGATGACGGGCAGCCCTTTGCATAGAGCTTTTCCCTGGACTTGGAGTTGGTCTTTCCCTGAGGATCTAGGACTTTGGGCCCTTCTGTGCTACCTCCAAGGAATCAGTCACCTCTGTTCTGCTGAGTCTGGAGACCAGGTGGTGGGGTGGACGGGGCATAAGGAAGAGTGATGCATACACAGTGCTAGAGTACAGAATGCAGTAAGTGATCCATGGGGGCAGAGAGCAAGGTACCGCATGATCAGAAGAGAGAACTAGTGCTACCGCCTTGCTTGTCTAGTACATTAAAACTTACAAGTCATGTTCACACTTCTCTGCTCACTTAGTTTTTTAAACAGTCCTCTGTGTGTGTTTATTTCCCTTTATGCCTGAGAAAACCAGAGAGGTAAAGTGACGTGCCCAAGGTCAGATACCACTAAGTGGTGATACAGAGTACCAGACATAGTAATTCCAAGTTCCTACCCTCTCTGTCTTCCCCCAACCCGTGCCCCGTCGTCCTCTGGAACATGAGACTGCCCCAGGTGAGCTGGGCTCCTCTCAGTCACACTAGGGGGGCCTCCCTTCTGTCTTTGCTGACAGAGCTGACTACCTCCTCTCATCTTCCTCACCCTCTAGAGCAGCAGGAGGGGATAGATAGGATGGCCTGGCAGTCGAGAAAGGGAGGCCACTTCAGGGAGGTAGCAATGCAGTGGAAAGTGACCCTCACCTCCAGATGGGGGCTGCTCAGACACTGCCAGGTAAGAACTTGACAGAAGGACAGTACCTGGGGACAAGCCCAGGATAAGTGGACAACACTGGGAGTCGGGGCAGGAGTGCTTTGGGGGTGGGCATGACCCTCTGCCACAGCCCTTCTGCCTGGTGGGCATGGCAGTCTTCTGGAGCAAGTTGTGGCCGGAAGACCAGTAGCACATGGAGGCACCCTGCCTGGGACCATATAGGAATGGTGGGTGGGGTCCCTGTGTCAGGTCTGAGGGTGGTGGTTTTTTCTTTTTTTTTTTTTTTTTTGAGATGGAGTTTTACTCTAGTTGCCCAGTCTAGAGTGCAGTGGCACAATCTCAGCTCACTGCAACCTCCTCTTCCCGGGTTCAAGTGATTCTCCTACCTCAGCCTCCGAGTAGCTGGGATTACAGGCATGTGCCACCACACCCAGCTAATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATTTTTAGTAGAGATGGAGGTTCACCATATTGGTCAGGCTGGTCTTAAACTTCTGACTTCAAGTGATCCACCTGCCTCAGCCTCCCAGAGTGCTGGAATTACAAGCGTGTGCCACCATGCCTAGCTGGGTCTGAGGGTTTTGAAGTTGCTGGGCCTTGGTGGGGTGAGGGGAGCTTCTGTCTATAGCCCCAGGGGGCTTGTCGGTGTGGAACATTGAGTACAAAGGCAAAGGGGCACCCATCGGACACAGACCAAGGTCACAGTGCCTCCAGCAGGCTGGGCTCTCAGAAGCCTGACAGTGGGAAAGGGCTCAAGGAAGCAGAGACAAGCCTCCAGCAGGCACACAGAAGCAGCCCTGCCCCCAGTCACCAGTCTATTCCTAGAGAGCAGGGGGCAGAAATGTAGAGGATGGGTGGGCATGGAGGCCCACAGGCTGCCCCAGGAGACATCTGAAGTCAGCCTGGGTTCTCATCCCACCTTTCCCCTCAGGAAGCACGTGTCCTCAGTCTCATCTCTATCATAGGCAGTGGCGTAGCACATACCTTACAGGTTGTTGAAAAGTTGCAATGAGGCGATGCATGTAACTTGTATAGAATTGTGTCTGGCAGAGATGGGCACTTGGGCCATGATTGGGAGCTGCCCTTCTGCTGTCGTGATTGTACTCAGCAGAACGGCCCTTCCCAGAGTAGGCCCACGTCACGCCCTCTCCTACTCCCACCCATCCTTTTCTTTCCCCCAG
Seq C2 exon
GTCCTAGCTGGACTGCTGCACCTTGGCAATATCCAGTTTGCTGCCTCCGAGGATGAAGCCCAGCCCTGCCAGCCGATGGATGATGCCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259:ENST00000610930:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.4=100)
Main Inclusion Isoform:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains