GgaINT0131969 @ galGal3
Intron Retention
Gene
ENSGALG00000001837 | ORAI2_CHICK
Description
NA
Coordinates
chr19:4103711-4104464:+
Coord C1 exon
chr19:4103711-4103799
Coord A exon
chr19:4103800-4104420
Coord C2 exon
chr19:4104421-4104464
Length
621 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CCTTTGGTTTTGTGTTTCAGCCC
3' ss Score
9.38
Exon sequences
Seq C1 exon
GTTGCCTTGGCAGCGGTGGAGGCGGCGGAGGCTCCGGTACCCGGCGGCTCCCGGGGCGCCGCGCCCGAGCCGGCCAGCGGGCAGCAGCG
Seq A exon
GTGAGCGGGGAGACCGGCCCGGCAGGGGGAGGGGGCTTCGTCCTACCCGGGTTTGGGGTCAAAACGGCGGAATCGGGGGTTGGAAGGCAGCTGGGGCTCCGGCCTGGCCGTGGGGCTGGAAGGCACCGGCGCGGGGCTGAGGGGCGGGGGCTGAGGGCCCGCAGAGAGGCTGCCCATCTCAGCCGTGCCGTGCAGAAATCCCCACGCGTGCACCCCGCAGGTCGGTTGCGGGGCGCTGCCGGGGCTTCCCCTTCCCCCGGGCTGCCGCTGGGCGGGATACCAAAATCAATACGAGTCGGCGCTTTGCGTCTTCAGCTGCGGTTGGGCGCAGCGGTGGCGTGGCACGAGTTTGGCCAGAGCCGAGAGAGAGCCTCCTGGGCACGTCCTGCATCTGCGTGTCGGCATCCGCAGCCTCGTGCCGTGCAGTGCTGCGCAGCGCCGTGCAGCCCCCCCAGCACGGTTACTTCTGTTCTGAAGCCGTAACCTGCAAGGCAGGAGCACGGATCTCCCCATTACCCGCCTCTGCTGCGGACCGCTGCCTGAAAAGGGCTTCCGAAGTGAGGATACTTCCAGCTGAAGGTACCGTGCGTGTAAAAACGCCCCTTTGGTTTTGTGTTTCAG
Seq C2 exon
CCCCCGGAGCCCCCTGCAGCCCCTCCATGCCCACGGGCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001837:ENSGALT00000002840:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]