RnoINT0105558 @ rn6
Intron Retention
Gene
ENSRNOG00000001427 | Orai2
Description
ORAI calcium release-activated calcium modulator 2 [Source:RGD Symbol;Acc:1310213]
Coordinates
chr12:23544287-23553901:+
Coord C1 exon
chr12:23544287-23544658
Coord A exon
chr12:23544659-23553663
Coord C2 exon
chr12:23553664-23553901
Length
9005 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CACGTTCCTTCTTCCTCCAGCCT
3' ss Score
9.55
Exon sequences
Seq C1 exon
ACGCGGCCAAGAACAGATGCTGGGCATCCCCTAGTGTCACTGGCTAGAAGCAGGGCTCTCCCACGCTCGGACCCACCCACCTGAGCCCCACAGGGGCTGATAGCACTTTGCTGAAGTGAAGACCCCCTAGATCTTGTAGGAGGGGTCGATCCCCACCCAGCTCTTCAGGTCACATGGTCTGCGGCGGGCCCCACGGATGGGTCACGTGACGGCGGCGCAGCGTTGCCTAGGCAGCGGCTGCGGGCGGAAAGAGGGAGGGGGCCGGTCCTCCGCCCTGGCCCGGCTGCCGGGCCACCCGGCCCCGACACAGACGCTAGCCACGAGCCGGAGCGGAGAACTGGAGCCAAGCGCGCTGAGGGCTAGCCAGCCAGG
Seq A exon
GTGAGTGCTCAGCGGCGGCGAGAGCGTCCATCTGCGTCTCGGGAGGGTCTGAAGGAGAACAGGAGAGGGTCCCCTTCTAGCTAAGGGGCGTGAGGAAATTGGATCAGGGACACCGGACAGGAGGAGATGGAGCTTCTTCCTGGGTAGGCATGGCATGGAGAGAAAGGGACAGGATGATAAGAGGCAGAGGGGTAGCCGGGTGACCTAAATCCCTTGACATCCTTGGTACGGTGCAGTGTCAGAAGACTTCAATCATCGGGCTGCCAGCTGATTCTCAGGTCCCTAGAGTATAGGACAAGGATGCAGGTGGCTGGTTTTGGCAGGCCGCTGCCACCTCTCAGGCGCGTGGGTGACAAGACACAGTTCCTGTGCCCCAGATATTTGGAGGAAGTTAAAACAGGCAGACTCCATAGCCTGCTGCCTGGGACAGTTTAAAACAAACCTGGCAAGAGAAAGGCTGTCTAACAGTCTCGCCGGCTTTTTTCTATCAGACCTAATCGTTCTACTGCTTATTTTTAAAAGAAGAATAATAATAATTAATAATAATAATAATAACAACAACAATAATAAAGGTTCAGTCTGCCTAGTACTCTTAGAGCTGGTGATGTCTGACACATGTGGGCTCCATCTTGTCTCGCTGCTCGCCGCTCCCCCTCCAGCCTTGGAGTTTGTAGGCCAGACACTGCTCCTCCCCATGGGGCAAGGGTTGGACCAAGATAGTTCCTCAGAGTGTAAGGAATGGATTTGCGGTGGAAATCCTACGATCCCAGTGCTCAGGAGATGATGTGAGACAATCCCAAGTTCCAAGCCAGCCTGGGCTCCACAGCAAGACCCTGCCTCAAAACAAAACCAAAAATAGAAAGGGAGTCAGTAGGGAGCTGCAGATGTAGCTCGGTTAGTAGAAAATTTACCTAGCGTGCAGGAAACCCTGGTTCAATCCCGAGCCCCATGTAAATCAGGTATGTGATCACAGCCCTCGGTGCGTCCAGAGTTCAAGGCTATGTTTGGTTACAGTTTTGGTTGGAGGCTGACCCGGTCTACATAAGGCCTTATCCAAAAGAGAAGGAAAGAGGGAAGGAGCTGGGTGGTAATGACAGCTCAGAGGTAGAGGTGGATGGATCGCTGAGTTTGGGGTCAGCCTGGTCATAGAACAAGTTCTAGGACATCCAGAGGGTGCAAAAAAAAACAAAAGTTAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAAAAAAAAAAAAGACCCAAAAAAAAAAAAACAAAAAACAAAAAAAAAAAACAAAAGTTAAAATGAAGAAGAGGAGGAGGAGGAGGAAGAGGAGGAAGAAGAGGAGGAGGAAGAAGAGGAAGAGGAGGAGAAAAGAGCATGAATTTGAGCCTCCTGGGCTAGTACAGGGGAAGAGAGAGTGCCTGTCCGTATAAGACTTGCTGGCCTATCAGGATTCAGCTGGAGGCAGATAGCCCTCCATGCCCACCCCTAGTCACTCCCACTCCCGGGCTACCCTACCTCAGCTGCACTCTCAGACCGGAACCCAGGGGCCTTCCTCATTTGAGGTCCCCCAGGGAAACCACCTTCTTCACATTATGAATCCTTTCCTTCCTTTGATCCCCTGGAACTGGAGTCACAGACAGTTGTTTGCCATGTGGATGCTGGCAATGGAACCTGGGTCCTCTGGAAGAGCAGCCAGTGCTCTAACCACTGAGCACCGCCCCTCTCCCCCAAGCCATCTCCCTGGGTGAAAGATAGTCTATCCCCAAGAGACTTGGCAATACCTGACTTCCCGTTGCAGTCTACCATCGTGTCCCTGTGCTCTGGCACTGCTGAAGAAAGTCCAGCATAGTCCTACTGTCTGTCTGCAACTAGCCCTGTTGTCCCAGTCCAAGAGTCTTCTATCTCCTTGTCTTCAAGCAACCAAGCTCCCTGCTCGATTCTCTGGAGGATGAGAGCCTTCCTAAACATGGCTTCAACTTCCTATTTCTCAGAACCCTCTCTGTGGGCAACAGCTTGTCTCGGAGAGAGGCTCTGTTTTGGTTCTGTGTCTATGTGGGGGCGTGTGCACATGAGTACAGGTGCCTTTCGAGGCCACAAGAGGGCAGTAGACCTCCTGGAGCTTTTTAAGTTGTAAGTTGTTTAACTGGGATTCCGGAAACCTGACTCTGGTCCTTTGTAAGGGTAGTATATTATTTTACTCTCTACACCACTTCTACTGAGCAAAGGGTCTGTCTAGGACACGTTGCCTTTTCTACCCATTTCCAGATGCCCCAGTGTTAGGCTTGCTTGTGACAGGTAGTGAGCCCTTCTGTTACCACCTGACCACAGGCAGGGAGCTAACCAGAGAAGCATGTTTCTTGCTTCTATGGCTCCCCTATCGGGCATTTCTTTGAAGGTCGAGATTCTCTCTCTTGTGGGATTTTGGTTTGGTTTGGATTTTCACCTCATCCTACATGGCTTGGTCCTGGAAATCTGACTGGAGCAGCAAGGGAGTGAAGGAGGGACGGACACACAGACATGGGTACAGGAAGGCTGGGATTAGGTGGTCCATGCTCACTGTGATGGAGTAGTACGAACGATACAATAACCCAGGACCTCAGTGAGTTTATTATGTACAGTACATGGAGAGCTGCTCAGGAGGATGTCTCTGTAAGGGTGTGGCCACATCTTTGTCCCTTACCCTAGTGATGTCCCCAAAGCTGCAGAACCTGAGAAGTAGCTGGCAGCCTCAATCTCTGTCCTCTGACACTGCACCCTAGCAAGGGTGTTAAAGGGATTGAGTTTACCTGGCCACCACCTCCCTGGTTGCTTCACCCTGGAGGAGGAAACTGCAGTTGTCAGTTTGTGCACACTGCTCAATCCTATATAAACTCTCCTTGGACCAGAGAAAGCCCTTGCCATGCCTCAGAGCCTCACCTGGCGGAAGGCATTGCCAGTTCCCACGGGTCTGAGGCCTTGGCCTTTGTCAATAAAACACACTGACTCCAGGCTTGTGGCTCACCATAATTTTTTGTTTGAGTTTGGAGTTTTGCTTGCTTGTTTGCTTTTGAGACAGAATTTCCTACAGCCTAGACTGAGCTAGAGTATATAGCAGAAGATGGCTTTGAACTCCTAATCCTCCTAACTCCATCGAGTTTTACACCAAGCTGGGAATCCAACCTTTTACCTCTGAGCCACGCCCCCAGCCCCTCCCTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGGCCCTCACTGGGGGATTCTAGGCAGGTGCTCTGCCACTGAGCCACGCCCCCAGCCCCTCACTGGGGGATTCTAGGCAGCTGCTCTACCACTGAGCCACGCCCCCAGCCCCTCACTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGCCTCTCCTTTACCTTTGATGCCTAAGCATGAGAGCATCCGCTGAGGGAAGTAAAGTTGTTTTTCACAGGTTTTTTTTCTCCCTTTCTATCCTCTCTCCTATCCCCCCTCCTGCCGCCCCCGAGACTGCAGTCTTATTTTTGTGTTGTATGGGTAGGAAAGAAAAGAAAAAGTTCATTTCCAAATTGTGACATGTTCAATCATTTGGAGCTAACTTATGGGGTGATGAGAAGTATTTGTCTGAGTCTTCTCCAAGGGAGGAGACACCTTTGGCTGCAGGTGGTGACATGTGACCCCAGTCCTCAAGTTGGCATTCTTATAAACAGACCTAGAAGCCTTGTATGGTGGCTCAGGCCAGTGATGGGCAGATCATTGTGGAACTGGAACATATGGATGCTACTTAGCGAGGTTAAGGCCAGCCAGAGTTAGTGAGACCCTGTCTCTTACACATATGCACAGAAACAACCATGTCGGGCAGCGGTGGCTCACACCTCTAATCCCAGGATTCAGGAGGCAGATGCTTCCCTGATTCATGGCCAGCCTGATCTACAGAATGAGTTCCGGGACAGCTGGGGCTACACAGAAAAACAAACAAACAAAAAAGAAGCGAAGGTAATTGTTTTCAGTGGCTGTCCCCTCGAGGGACTTGACTGAACACAGAACAGTTCCTTGGGGACCCTTGTTGTTGGCGATGACAGCTGAGGTTTCTACAGCTTGCCTGAGAACAAGGAGGAAGGCAGGACAAAGGACCCTTCCGGTTGCTGTCTTCCTTTATGGTCCTCTTAGGTGTATGACATGGTGTGTCGAGGGGCACTTCCTTCACCGCTGACCCTCATAAACACCCTAGCCTCTTATGGGACCATGGACTCTATCCTAACGTTTTGTTTCTTAGTCTGTCTCTCCCTCGTTTCTTTCCCTCCGGTTTCTGTCTCTTTTAAATTGCGTTGCTTGTTTTGCTGTATGCCACAGCACGCCTGTTAGGATCAGAGGACAATTTTCAGGAGTCAGTTCTCTCTGTCCACCTTTTGGGCCCCAGGGGTGGAATACTGGTCCCTGGATTGATGGCAATCTCCTTACCTCCAAGATATGTCACTAGTGCGTGTTCTCTTCCTCTCTCCCTCCTTCTCTTCCCTCATACACACACATGCGCACACATACACACACACACACGCACATACACACACATGCTCATGCTACACACACACATGCACTTACACACACATGCTCATGCATACACACACATGCACATACACACACATGCTCATGCACACACACACATGCCATACACACACATGCTCATGCACACACACATGCTCATGCACACACTCACACACACACTCTCATGCACGCACACACACGCACATACACACACATGCTCATGCATACACACACACATGCACTTACACACACGTGGTCATGCACTCACACACACATGCTCATGCACACACACACGCTCATGCACACACACACGCTCATGCACACACTCACGCACACACACAAACACACATGCACATGCTCACACTCATCTCACGCACGCAAGTTTCACTCTGCAGCCCACACTGGCCTGAAGCTCTCACTCGTCCTGACTCAGCCTCCATGGGGCGAGAGGCAACAGGCCTTTATCACCACCTGCCTGGCTACAGTTTTCTAACAGCCTCAGGGAAGCTTTTCGTGGGGCCTGGTGGCCCTGAACACTGGAGCTATTGTCTGATGCCAAGCCAGCCACAAGGTACCTTTGCCCTTCAGGCTTGTCCTGGAGCGATTACTCAGTTGGCTCCCACCCGCAGTGCGCCACCACAGGCTACCCTGAAAGAAACCATACCAGTCTTTGCTTAGAATTAGTGAAGATTTGGGTTTAGACATCTTTTTTTCTTTTTAAGATTTATTTTTTGTTGTGTGTGGGTATATGCACATGAATGCAAGTACCACAGATGTCCGATTCCCCTGGAGCTGGGCTTATACATCGTTTGTAAACTGCCTGAGGTGGATGCCGAGAATCAGCTCAGGTCCTCAGGAATGCAGTATGTATGTTCTCTTAACCACTGAGCCATCTCTGTGGTCCCCAGCGCCTACTTAAAAAGCTGGACACGAGGACCTGCCTGTAATCCCAGCACTGCGGGGCAGAGATGGGAGTGTCCTGGGAACTTGAGAGCCTGTCTAAAAAGTAAGGTGGAGAGCATAGACACACACACACCCACATATACATATAGACACTCTCACACACACACACTCACACACACATACACAGACACTCACACTCACATACACGCAAGACACTCACACACACACAGACACTCACACTCATACACTCTCACACACACACATATACATACGCACATGTACACACACATACACAACACCATACCTCACAGCACAGCATGACCTCCAATTTTATATCCACCTGTCTCAGCTCACTCTTGATTTTCACTTTGCTAAAGGGTTTCCATTGCAGCCTGGGTGTAGTTCAGCTTATAAAGCGACTGTAGGTGGTGACTCATCACGACTCTGATTAGATTGGAGAAGCTAGTAGCTGCTGAGAAATATCCCTCACTCACGTGGAAAGCAGCTCTGGGTCTTCAGGGACCTTGTGTTCAAGAGTCCAGTAAGCAAACCTTCAATCCCACCTAGACCAGAAGCTGAGGCAGGAGGCTCAACCTGAGCAACTTACCAAAACTCTGCCTCAAAATAAAAGCTAAACAAAGGAAAAAGGGAACAGAAGGGCAGGACGGTTGGTTCAGTAGCGAGCACTGACTGCTCTGCCAGAGCATCCCATTCCATCTTCAGTACCCACATGGCAGTTCACAGCCATCTGTCCCCTTCTGGCCTCCCTTGGGCACCACATATGTACATGGCAAGCAGACACACATGCTAGCAAATGAGAGAGGGGAGGGGAGGAGATTGAGATCAGTTGAGCAGATAGTGTACCTCATGCTTTCCTAGAATCCCCCAGTGAGGGGCGGGGGGTGTGGCTCAGTGGTCAGCCCCGCCTAGAATCCCTCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGTCTAGAATCCCCCAGTGAGGGACTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCAGTGAGGATCTGGGGGCGTGGCTCAGTGGTCAGCCCCGCCTAGAATCCCCCAGTGAGGGACTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATTTCCCAGTGAGGAACTGGGGGCCTGGCTCAGTGGTAGAGCATCTTCCTGGAGTTCCCCACTGACAGGCTGAGGCATAGCTTAAAGGAAGATCACTTGTCTAGAATCTGCCAAGAAGCAATGGATTCTTGGCAAGCACTGTACTGCAGAGCCCCGTTCCACCGCCAGCACCCTGGCTCTTTCTGAGTGGGTCAGTTCCCTGATCCGTGAAGACTGTCAGTCAGGGCAGTCAGTGGGTACTTTCTGTTAAACTTTGAAATCCAGTCACACAAAATAGGTCCCATCATGAGTCAAATTTACAGAGCAACTGCGTGGCCATGGTGGTGCCTGGTATTGCATACCTGACCCTCCTCTGCCGAGAGCTCTGTGTTCTGTCTTGCAAGGCTGCCTTAGTGACCAGAGCTCCATACCCAAGCTACTTTTGAGCCCTTGCCTCTGCCATTGGACTTGGAAGCCAAGCATAATGGCGCAGGCCTGTAATTCCAGCACTCAAGACGCCAAGACGCTGAGGTAGGGTCATGAGTTTGAGGCCAGCCTAGCCTAGAGCAAGCTATTATCTCAAAACAGAACACAAGGCTGGGGAGATGAGTCAGTCATAAAGCGCCTGCTGTGTACGCGTGAAGGCCTGAGTCCAGGTCCCGGCATCAGGCATTCTGCACCTGTAATGCCCGTGCTCAGGAGGCAGAGGCAGGAGGACACCTGGGACTGCACAGATGGCCAGGTTAGCCAAGTTGGCAGAGTCCAGATTCAATGGACTTTCTCAATTATCAATTGGAGTCTGACGGAAGAAGACACACAGTGTCAGCCTCTGGCTTTTGTCTGCACAGGTACCAAACACGTTCACTCGTACACATAAAATGCAGCACACAAGCACACACATGCGCATGCTTCTAAGATTTCTATTTAACAAACAGAACAACACAGATGCTAGCGATGTAGCTTGGTTAGAAGGTGTCCACCTAGCGTACTACAGGCCTCGGGTTTCATGCTTGACCCTACCAAGCCCAAACCAGGGTGATGGTGCCCAGGCCTTTGTTCTCAGCCACTGAGGTGGTGGCAGCCGAGGGATCCTGTCATCATTGCCTCAGACCGATAGGTTCCTGGCCTACCTGGGCTCCACGAAACTGTGTCTCCAAACAGTAACAGGGGAATTTAGATTTTGGTTCTTTCTAGGGCTGGCAAGATGGCTTGGCAAGTAAAGGGGCTTGCTGCCAATTGTGAGAAGCTGAGTTTGATCTCAGGGAGCCACATGGAGGAAGGAGAAAGCCGACCCCTGCAGATTGTCCTCTCATACCCACTGCTACTGTGTCAGGGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGTCTGTGTGTGTCTGTGTGTCTGTGTGTGTCTGTGTGTCTGTGTGTGGTGTGTGTGTGTGTGTGCATGCTTACTCTCAACACACTCACAAATTAAAATAGACAAGAAAAGCATCTGGAGGGTTCAGGGCTCAGAGCTCTTCCCGACTTGCTGAAGACCCTTCATTCCCAGCGCCCACACGGTGTCTCACAGCCACTTGTAATTCCAGTCCCAGGGCGTCGTCTTGCACCAGTGACACATGCACACCTACGTACTTGCAGAGAAAGCACTCATGCATGTAGAATAGAGCAAATACATCTTTTTGTTTCGTTGTTTTCGTTTTCAAGACAGGGTCTCTGTAGGTAGCCTTGGCTGTCTTGGAGCTCACGCTGTAGACCAGGCTGTCCTCGAATTCAGAAATCCGCCTGCTTCTGACTCCTGAGTGCAAGGATTAAAGGTGTGCACCACCACCACCAGGCTTTTAAAAAGGTAGACAAAACCGGAACCAAAGCATGGGGCTGCTGAGGTGTCCTCGGTGTTACAGATGTTTGCCGAGCAGTCACAGGGAATTGAGTTCAGGTCCCAGCAGCCACCTAACAAGTCGGGCTTCCTACCCGTGTCTGTAACTGCAGCTTTGAGCAGGGCAGACCCAGAAGAACACTGGAGGCGGGGCACTGACTGGATCCCAGCTTGGTGGAGCGGAGCGAGCCCTTGCTTGAAAAAAAGACCCTGGAAGGAGTAGGCAGCGTAGACAAGGATACCCTATGCCCTCTTCTGACCCCTATATGTGTGCAGGCTCATGTGCACATGTGCATATATACTCACACAGGCATGCACACGTACCATCACACACACACATAAAGAAACGCAATGTATCTTAAGACACAGAACTACAAAAGGCCGCAGACTCTGGTTTTTGCACAAGGACCGTCTAAGGTGCTCCAGAATATCACGTTCCTTCTTCCTCCAG
Seq C2 exon
CCTGGTCCCCACCATGAGTGCCGAGCTCAATGTGCCCATGGACCCCTCTGCCCCCGCCTGCCCTGAACCCGGCCACAAGGGCATGGATTACCGAGACTGGGTCCGACGCAGCTACCTGGAACTGGTCACATCCAACCACCACTCGGTGCAGGCCCTGTCCTGGAGGAAGCTGTACCTGAGCAGGGCCAAGCTGAAGGCCTCCAGCCGGACCTCTGCCCTCCTGTCCGGCTTCGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001427:ENSRNOT00000001938:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.831 A=NA C2=0.244
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF078567=Orai-1=PU(18.2=42.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]