MmuINT0113442 @ mm9
Intron Retention
Gene
ENSMUSG00000039747 | Orai2
Description
ORAI calcium release-activated calcium modulator 2 [Source:MGI Symbol;Acc:MGI:2443195]
Coordinates
chr5:136637357-136646526:-
Coord C1 exon
chr5:136646408-136646526
Coord A exon
chr5:136637595-136646407
Coord C2 exon
chr5:136637357-136637594
Length
8813 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TCACGTCTCTTCCTCCCCAGCCT
3' ss Score
8.33
Exon sequences
Seq C1 exon
GGAGGGGGCCGGTCCTCCGCCCTGGCCCGGCCGCCGGGCCACCCGGCCGCGACACAGACGCTAGCCACGAGCCGGAGCCGTGAGCTGGAGCCAAGCGCGCTGAGGGCTGGACAGTCAGG
Seq A exon
GTGAGTGCTCGGCCGCGGGTGGGCCCGTCCATCCTTGTCTGGGGGGGGGGGGTGTCTGAAGGGGAACAGGAGAGGGTCCCCTCCTAGCTAAGGGGCGCGGGGAAATTGGATCAGGGACACTGGACAGGAGGAGATGGAGCTTCTCCCTGGGCAGGCATGGCGTGGAGAGGAAGGGACAGGCTGATGAGAGGCAGAGGGATGGCCTGGTGACCCCAATCCCTTGACTTCCTTGGTAGAGTGCAGTGTCAGAAGACTTGGATCGCGCGGGGCTGCCAGCTGATTCTCGGGTCCTGCAGTCGCAGGGACTTCCCTAGAGTATAGGACAGGGATGCAGGTGGCTGCTTTTGGCAGGCCACTGCCACCTCTCAGGCGCGTGGGTGACAAGACACAGTTCCCGTGCCCCAGATGTTTAGAGGAAGTTAAAACAGGCAGACTCCATAACCTGCTGCCTGAGACAGTTTCAAACAAACCTGGCAAGAGAAATGCTCGTCTAACAGCCTTGCCGTGGGTTGGCTTTTTTTTTTTTTTTTTAATTTTTTTTGTCAGACCTAATCTTTCTGCTGCTCCTCATTTTAATAATAATAATAATTTTTTTTTTAAAAAAAAGGTTCAGTCTGCCTAGCAATCTTAGAGTTGGTGGGTGCTATCTGACAGACTTATGGGCTCCATCTTGTCTCACCGCCCCCTCTGGCCTGAGCTTGGAATTTGTAGGCCAGACTCTGCTTCTCCCCATGGGGCAAGGGTTGGACCAAGATAGGCCCTCTGAGTATAAGGAATGGACTTGTGACAGAAGCTGGTGATGCCTGCCATCCTGGCACGCAGGAGATTAGGTGAGACAGTCCCAAGTTCCAAGCCACCCTGGGCTACACAGCAAGACCCTGTCTCAAAACAAACCCAAAAATAGAAAGGGGATCAGCGGGAGCTGTGGATGGAACCCCTAGAAAATCTGCCTAGCGTGCAGGAACCCTGGGTTCTAACCCCAGCACCATGCAAAGCAGGTGTGTGATCTCAGCCCTTGCAGCATCCAGAGTTCAAAGCTATGCTTGGTTATATTTTTGGTTGGAGGCTGACCTGGCCTACATAAGGCCCTATCTAAAATAGAAGGAAGGGCCGGGCGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAAAACCAAACAACTAAAATAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGCTGGGTGGTAATGACAACTTGTAGGTAGTGTGGATGGATGGATGGATCTCTGAGTTTGGGATCACTCTGGTCACAGAACAAGTTCTAGGACAGGCAGAGCTCGGAAAAATGAAAAAAAAAAGAAAGAAAAGTAAAAAGAAAGAGATAAGAAATAAAGAAGAAAGGAAAGAAAGAAAGAAAAGGAAAGAGAATGAATTTGAGCCTCCTGGACTAATACAGGGGAAGGGTGTCTCATCTCCTTATAGGACCTGCAGGCCCAACACGATTGAGCGGGAGGCAGACAGCTCTCCACACCCACCCTAACCACTCGGAGCTATTTGCATATCCTCACTCAGCTGCACACTCGGACTGGAACGCAGGGGCTTGCCTCATTGCGGTCCCCCAGAAAATCCATCTTCTTCACATCATGAATCCTTTCCTTCCTTTGATCCCCTGGGTCTGGAGTCACAGACAGTCGTTTGCTACCATGTGGTTGCTGGGAATGGAACCTGGGTCCTCTGGAAGAGCAGCTAGTGGTCTAACCACTGAGCCCCCCGCCCCCCCCCCCACACAAGCCATCTCTCTAGATGAAAGGTAGTCTATCCCCAAGAGACTTGGCAATATCTGACTTCCAGTTGCAGTCTCCCATCATGCCCCTGTGCCCTGGCACTGCTGGAGAAAGTCCAAGAAAGTCCAGCATAGCCTTACTATTTAGCTCTGTGCTGCTGTCCCAGCCCCCCAGAGTCTTCTATCTCTTTGTCTTCAAGCAGTCAACCATCCTGCCCCATTCTCTGGAGGATGAGCGCCTTCCTGCACATGACTTCAGCTTCCTGCTTCTCAGAACCCTCTCTGTGGGCCACATCTTGTCTTGGATAAAGGGTCTGTTTTGGTTTTGTTTAAGATTTTATTTTTACTTGTGTGTGTGTGTTTGTGTTCATATGAGGGCGTGTGCACATGAGTGCAGGTACCATTGGAGGCCACAAGAGGGCAGCAGACCTTCTGGAGCTAGACTTACAAGAAGTTGTAAACTGTCTAACTTGGGTGCTGGACACCTAACTCTGGTCCTTTGTAAGAGTAGTAAATGATTTTACCCTCTGCGCCATCTTTTAGTATGCAAAGGGTCTGTCTAGGACATGTTGTCTTTTCTACCCATGTCCATATGCCCCAAAGTTGGGCTTGCTTGTGACAGGTAGCCCAGCCCTTCTGTTTCCACCTGACCATGGAGCAGGGAGCCAACCGGAGACGTATGTTTCTTGCTTATCTGGCTCCACTATTGGACACTGAGTTCTTTGGAGGCAGAGATTCTTTCTCTTGTGGGGTTTTGATCTGTATGGTTTTTCACCTCATCCTACATGAGCTGATCCTGGAAACCTGACTGGAGCAACAAGGGAATGAAGAAGGGAGAGACACACAGACACAGGTACAGGAAGGCTGGGATTAGGTGGGCCATGCCCACTGTGGTGGAGCAGTGCCAACTATACAGTAACCCAGAACCTCGGTGAGTTTATCATGTACAGTACAAGGAGAGCGGCTCACGGGGACGTCTCTCTGTAAGGGCGCAGCCACATGGACCTCACCCTAGGGAATTTCCCAAAGCTGCAGGACCTGGGAAATGGCTGGCTACCCCAATCTCTGTCCTCTGACACTGCACCCTAGCAAGTTGTCAAGGGATTGGGCTCACCTGGCCGCCACCTCCCAGGTTGCTTCACCCTGGAGGAGGAAGCTGCAGTTGCCAGTTTGTGCACTCTGCTCAATCCTGTATAAACACTCTCCTTGGACCAGAGAAAGCCTTTGCCTTGCCTCTGAGCTTCACCTGGCGGAAGGCTTTGCCAGTTCCCACGGGTCTGAGGCCTTGGCCCTTGTTAATAGAATAGACTTACTCCAGGATTCTGTGGCTCCCCATACTTTTTTGTTTGAGTTTGGGGGGCTGTTTGTTAGTTTGATTGTTTGTTGATTGGCAGGATTTCCTACAGTCTAGGCTGAGCTGGAATGTATAGCAGAAGATGGCTTTGAACTCCTAATCTTCCTTACTCCATCTAGTTTAATGCCATGCTGGGACTCCAACCTAAGGCTGTGTAAACCTTTTACCACTGAGCCACACCCCCAGCCTCTCCCTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCAGCCCCTCCCTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCAGCCCCTCTCTGAGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGTCCCCAGCCCCTCCTTTACTTTTGATGCCAAAGTATCCATGTGATTTTGAGAGCATCATGGGTATGAGGTAGTAAAGGGTTTTTTCACAGGGTTCTCTCTCTCTCTCTCTCTCCCATCTCCTACCCTCCCAACCCCCAGACTTCAGCCTTAGTCCTGTGCTGTATGAGTGGGAAGGAAAAGAAAAAAGTTCATTTCCAAATTGTGATATGTTCAGTCATTTGGAGCTAACTCATGGAGTGGTGAGAAGTTGCCTGAACCTTCTCCAAGGGAGCAGACATCCTTGAGGAAGTGATTGGTCACAGTCCTGCTGGCTGCAGGTGTGGGTGACATGTGACCCTAGTCCTCAAGTTTGCATTCCTATAAACAGACCCAAAAGCCTGGGATGTGACTCAGCCTGTCATCCCAGCACTCAGAGAGAGAGATGGACGGATGGATCAGTGTAGCGCTGTCTGATGTGGATGCTACACAGCAGGGTTCAGCCAGCCAGAGTTAGTGAGACCCTGTGTCTTACACATTGCACAGAAAGAACAATGTCAGGTAGCAGCGGCACACGCCTTTAATCCCAGGACTCAGGGGAAAGAGGCAGGTGCTTCGCTGATTCATGGCCAGCCTGGACTATAGAGCTAGTTCCAGAACAGCCAAGGCTACACACAGAGACCCTGTCTGGAAAAACAAACAAACACAAAGGAAGTAAAGGCATTGTTGTTAGTGGCTGTTCCCCAGAGGGACATGAACACAGAACGGTTCCTCAGGGACCCTTTTGTTGGCCAACGATAGCTGAGGTTTCTACAGCTTGCCTGAGAACAGGAGGAAGGCAAGACAAAGAACCCTTCCCAGCTACTGTCCTTCTTGGTCCTCTTAGGTGTTTGACATGGGTGTACTGAGGGGTGCGTCCTTCACCGCTGACCCTCACAAACATCCCAGCCTCTTATGGGACCATGGACTCTGCCCTAATGTTTCTCTCTTAGTCTGTCTCTCCCTCATTTCTTTTCCTCTGGTTTCTCGCTCCTTTAAATGACAATGTTGATTTTGCTTTATGTCACAGCACCCCTGTTAGGATCGGAGGACAGCTTTCAGGAGTCAGTTCTCTCCATCCACCGTGTGGGCCCCAGGGATAGAACACTGGTCCCAGGATTGGTGGCAAGCAGCTTTACCCACTGAGATATTTCACTAGTGTGTGTTCTCTTTCTCTCTCCCTCCTTCTCTTCCCTCATACACATACGCACATGTACACACACACACACACACGCTCATGTGCACACACACGCAATACTCTTACACACAAACAGCACACACATACACACTCATGCACATACTCACACACACTTGAGTGTGTACACACACATGTGCACACACACATGCACACACACACTCACGTACACACGTCTCACTCTGCAGCCTACACTAGCCAGAAGCTCTCAGTCTCCCTGACTCAGCCTCCACAGGGCTGAGCTGACAGACAGGCCTGCATCACCACCTGCCCGGCCATAGCTTGCTAACAGCCTTAGGTAAGCTTTCCACGGGGGCTGGTGGCTCTGAACACAGGGTTATTGTCTGATGCCAAGCCAGCCACAAGGTGCTCTTGCCCTTCAGGCTTGTGCTAGAGAGATTACCCAGCTGGCTCCCGCCTGCAGTGCGCCGCCACAGCCACAGGCTGCCCTGAAGGAAACCTGCCAGTCTTCGCTTAGAATTAATTAGTGAGGATTTGGGTTTAGAGTCAGACATCTTTTTTTTTTTAAGATTTATTTTTTTTTATTATGTTAGCTCTGTGTGTATAGGCACATAAATGCAAGTGCCACCAATGTCTAAGTCCTCTGGAGCTGGGCTCATACATAGTCTGTAAACCGCCTGAGGTGGATGCTGAGAACTGAACTCAGGTCCTCAGGATGGGAGTACCATGGGGACTGGAGAGCCTGTCACAAAATTAAAGTGGAGAGCAATAGACACACAGACATACACACTCACAGATCCTCACATACACACACACTCACACATACACACATACAGACACACATACACACACACTCACATACACACACAGACACATACACGCACTCATACTCACAGACACACACAGATGCTCATATACACACAGACATACACATAGACACTCACATACACACTCACACACATAAACACACATATACAGACATATACACACACAGACACACATAGACATTCACATACACACACACACATAGACACTCTCACACACATACATATACAGACAAACACACACAGACACACAAAGACATTCACACATACAACCATACCTCACAGCACAGCATGGCCTCCAATTTTAAATCCTCCTGTCTCAGCTCACTCTTGATTTTAATTTTGCTAAAGGGTTTCCACTGAAGCCCGGGTGTGGTTCACCTTAGAAAGTGACTGTAGGTTCTGGTGGTGACGTATCATGACTGCGATTAGATTGGAGAAGCTATGAGCTGCTGAGAAATGGCCTTCCCTCACATTGCAAGCAGCTCTGGGTGCTCAAGAGTCCAGCAAGTAGCCGGGCCTGTGAGCAAACCTGCAATCCCGCCTAGTCCAGAAGCTGAGGCAGGAGGCTCAACCTAAGTAACTTATCAAAACTCTGCCTCACAATAAAAAAATAAAAAAGGAAAAAGCGAGCAGAAGGGTGGAAGGCTGGTTCAGTAGAGAGCACTGGCAGCTCCCGCAGAGCCTCCCATTTGATCCTCGGTACCCACATGGCAGCTCTCAGCCATCTGTCCCTCTGGCCTCCCCTGGGCACACGTGTGTACATGGTACACAGACGCATGTGATAGCAAATGAAAGAGAGACAGAGACAGGGACAGGGGGGAGGGAGGGAGGGAGGGAGGGAGGAGGAAAGGGAGATTGAGATTATTTGAACAAAAGTATACCTTATGCTTGTCTAGAATCCCTCAGTTGAGGGGGCTGGGGGCGTGGCTAGAACATGTGCCTAGAGTCCCCCGGGGACAGGCTGAGGCATAGCTCAAGGGAAGATCACTTGTCTAGAGTCTACCAATATGCGATGAGTTCTAGCAAGCACTCTATTGCAGAACACTGGCTGCTCCCCCACTCCCACCGTCAGCCCGCTGGCTCTTTCTGAATGTGTCTGTTCCCTGTTCCTTGAAGACTCTGCCAGGCAGAGGAGTCAACAGGTATTTTCTGTCAAACTTTGAACTGCAGTCACACAAAATAGGCCCCATCCTGAGTATCAGGAGGGAGGTGGGTCAACAGCTTGGCCATGGTGGGGCCTGGCATTCCTGACCCGACCCTCCTCTTCTGCAGAGAGCCCTGTGTTCTGTCTTGCAAGACTGCCTTAGTGACCAGGACTCCATGCCCAAGCTACCTTTGGGCCCCTTGCCTCTACCATTGGACCTGGAAGCCAAGCATCATGGTGCAGGCCTGCAATTCCAGCACCCAAGATGCTGAAGCAGGGTCATGAGTTTGAGGCCAGCCTAGCCCAGAGCAAGCCATTATCTCAGAACACAGGGCTGGGGAGATGGGTCAGCCATAAAGTGCCTGCCATGTGGGAAGGCCTGAGTTCAGTTCCCAGCGTCCGTGAACAGCTGTGCATCTGTAACCCCTGTGCTCAGGAGGTGGAAGCAGGAGGACCCCTGGGACTGGACAGAGAGCCAGTTTAGCCAAGTTGTCGAAGTCAGGATTCAAGGGGTAATCCTTTCTCAGTTATCAATCGGAGTCTGATTGAGAAAGATACAGTATCCGCCTCTGGCTTTTGTCTGCCCATGTACCAAACATATTCACGTGTACACACACGAATCAGGACACAAACACACACATGCACACAGTTCTAAGGTTTTTCTTTTTTTTTTTTAAACAAACAAAACAATACAGATGCTGGCGATGTAGCTGTCCACCTAGCATAATAAAGGCCTTGGTTTCATGCTTGACACTAAACTAGGGTGATGGTGCCCAGGCCTTTGCTCTGAGCCACTGTGGTGGTGGAGGCCAGAGGATCCTGTCATCCTTACCTCAGCCTGCGTTAGGTTCCTGGCCTACTGGGCTCCACAAAACCCCGTCTCAAAGCAACAGCAGGGAAAGCAAGAGGGCCTGCTGCCAATCAGGAGCTGAGTTTGATCCCAGGGAGCCACATGGTGGAAGGAGAGAACCAACCCCGGCAAGTTGTCCTCTGAAATCCACTGCATACTGTGTCAGAGGTGTGTGTGTGTGTGTGTGTGTACATGTGTGTGTTGTATGTGCACTTACTCTCAACACATTCACAAATTAAAATATACAAAAAAATGTAAAACAGGGTTGAGGATTTAGCTCAATGATAGAGCACTTGCCTAGCAAGTGCCAGGCCCTGGGTTTGATCCTCAGCTCCAGAAGGAAACACACACACACACACACATATATATACATACATATATATATTTAAAACAATGTAAACCAGGACCTGGAGCGCCATCTCAGGCTCAGAGCTCTTCCTATTCCTGCTGAGGACCCTTTATTCCCGGCGCCCACATGGTGTCTCACAGTTATTTGTGACTCAAGTCCCACGGCCTCTGATGGTCTCTTCTGGCACCAGGGACACATATACACTTACATACTTGCAGAGAAAACACCCATCCACATAAAATAAAGCAAATAAATGTTTTTGTTTTGTTTTTCAAGACAGGGTCTCCGTAGGTAGCCTTGGCTATCCTGGAATTCACTCTGTATACCAGGATGGCCTCGAACTCAGAGATCTGCCTCCTGAGTCCAAGGATTAAAGGTGTGCATGACCACCACCAAGCTAAGAAATACATATGTATGTATTTTAAAGGTAGACAGAATTAAAAGCAAAGCCTGGGGCTGCTGAGATGTCCCAGGAGCTAGGAGCGGAGGTCAGGTCCCGGCACCCACCTAACAAGTTGGGCATCCTATGTGTGTCTGTAAGTGCAGCTTTGAGCGGGGCAGAGCCAGAGGAACACTGGGGCTTACCGAATCCCAGCTTGGTGGAAAGAAGGTGAGCCCTTAATTGAAAAAGACCCTCGAAGGAGTAAGCAGTGTGATAAAGAAGGCTGCCCTAGGCCCTCTTCTGGCCTCTGCATATGTGCAGGCTTATGTGCACATGTGCACATACACTTACACTGGCATGCATACACACATACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACATAATATATCTTAAAACACAAAACCACAAACTCGAGTTTTTGCACAAGAACTATCTAAGATGCTCCAACGTGTCACGTCTCTTCCTCCCCAG
Seq C2 exon
CCTGGTCCCCACCATGAGTGCAGAGCTCAATGTGCCCATGGACCCCTCTGCCCCTGCCTGCCCTGAACCCGGCCACAAGGGCATGGATTACCGAGACTGGGTCCGGCGCAGCTACCTGGAACTCGTCACGTCTAACCACCATTCGGTGCAGGCACTGTCCTGGAGGAAGCTCTACCTGAGCAGGGCCAAGCTGAAAGCCTCCAGCCGGACCTCAGCCCTCCTGTCTGGCTTCGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039747-Orai2:NM_178751:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.136
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF078567=Orai-1=PU(18.2=45.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: