GgaINT0131970 @ galGal3
Intron Retention
Gene
ENSGALG00000001837 | ORAI2_CHICK
Description
NA
Coordinates
chr19:4104421-4105927:+
Coord C1 exon
chr19:4104421-4104464
Coord A exon
chr19:4104465-4105686
Coord C2 exon
chr19:4105687-4105927
Length
1222 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGGCTGTTTTATTTCCTCAGTGC
3' ss Score
8.41
Exon sequences
Seq C1 exon
CCCCCGGAGCCCCCTGCAGCCCCTCCATGCCCACGGGCAGTCAG
Seq A exon
GTGAGTGCTGCTCCATCGCCGCCTTTGGGTTTATGGGTTTCCTTCTGCAGCTGTTTACTTTCTTGGGAACGTCTCTGGAGTTGCTCTGGAGTAAAAAAAAAATTCATCCTTGTGGTATTTTCAGTTTATTTTTCTAGGGGAAGAAGCAGCTGTGATTGGGTGTTCTTGTTCTCCCCTTGTAACCTCTGAATTCGTCTTTCTTCTAATGGAATTTGTCCCGGGCTTGATGTTTCCAGCATGCTGAATTCCTGTGTGCTTTATGGAAACAAATGGCAGCACGGAGGCTGTCGGTGTCCCAGTGAAGACAAAGCCAGCACCCCCACTCCACACATACAGGATGCCATCACAGGAAGCAGTGCCGTATCTCTGCCACTCACAGACGGTCTCACAGCTCACAGTGCTTGGCTTGCAGCTGCAGCTTTGGTCGCTGTTCCTTCTGAGCAGCGTGGCTCAGAGCTGGGGGCAGTTGGTGCTTTTTTATCTCAGCCGCTTCCTCCAATCTCCCGGCAACCGCGGCTTGATGAGCCCACACCATATGGCAGGGAGCTGGGCAGGGCTGGAGCTGTGCTCCACCAAACAGTGCCTGCGACCCACGGGTGTGGGGCTGGGACTGATCTGTGCTCCTTCAAGGAGCTGCTGGGGATTCACAGCCGGCGGGGAAGTTTGTGCTGCAGGAGCTTGGGAGATGCATTCATTAACCCCATGCAGCGTTCAGCTCTGGGGCTGCTTTGGACAAGAGCTGTGCGTGTGTGAGCTGAGCAATGGATGAGTGGAAAAACTGGTGTCCAAAGGGAGCACAGAGTGAGCCCTGGGCACTTTAGTTGGATGTACCCTCATGCAATGCATCTGGAGCTGATGCACGATGCAGTGTGATGTTAAGCTGCCAGCTTAAAAGCAAACAATAGGATGGTGAGCGTATTTCTAAAGTGTCTTTATGTAAAACAAATGAGTGGGGAGGAATGAAAGGGGAAAGTTGAGATGTTGGCTTTGACGTGTAAAGTTGGGTGCCAAGTTGGGTGCCGTGGGATCTCCCCGACTGTGCTGCAGCAGTTCCAGGTTTCCTTGTGCAATCCCACCTGGTTCTCCTGGTCAGTTCTAGCAGGCAGATGGTTCAGTGCATCGTTTCCCTGCTGACTGAGCGTAGCTTTGTTCCAACACAGCTTTTCCAGCAGTTCATCCCGTCCGCTGCCTCCTCCTGACCGTGGCTGTTTTATTTCCTCAG
Seq C2 exon
TGCTTCCCTCATGATGAGTTCTGAACTGAACGTCCCGGTGGATCCCTCCACTCCTGCTTGCTGCTCTGAGCCTGGCACCAAGGGCATGGATTATCGGGACTGGGTGCGCCGCAGCTACCTGGAGTTGGTGACCTCCAACCACCACTCTGTTCAGGCCCTGTCCTGGAGGAAGCTGTACCTGAGCCGAGCCAAGCTGAAAGCCTCCAGCAGAACCTCTGCTCTGCTCTCTGGATTTGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001837:ENSGALT00000002840:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.026
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF078567=Orai-1=PU(17.6=44.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCAGCCCCTCCATG
R:
GCAAATCCAGAGAGCAGAGCA
Band lengths:
270-1492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]