HsaINT0118410 @ hg19
Intron Retention
Gene
ENSG00000160991 | ORAI2
Description
ORAI calcium release-activated calcium modulator 2 [Source:HGNC Symbol;Acc:21667]
Coordinates
chr7:102073996-102079628:+
Coord C1 exon
chr7:102073996-102074108
Coord A exon
chr7:102074109-102079390
Coord C2 exon
chr7:102079391-102079628
Length
5282 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TGTCTCTCTCCCACCCTTAGCCT
3' ss Score
8.67
Exon sequences
Seq C1 exon
GCGGAAGGAGGGAGGGGGCCGCGCTCGGCGCCCCGGCCGGGCCACTGGGCCACAGGCCACGCGGCCACGCAGTCCGAGCGGGAGCCGAGCCGGGCGGGGCGAGGGCAGCTCCG
Seq A exon
GTGAGTGTGGCGGCGCGGGGGCCTGGCGCGGGGAGCGGGGTCCCTGCGGCTGGGGGGGCCGGAATTGGACCGGGGACGCTCGGCGGGGAAGGGGACGACTGTAGGCTGCCCGGGCGCGGTCACTACCCATCCGGGGTTGGTGACCTCCACCCCGCGGGATCCCTGGCGGGGTGCGGCGCCCAGAGGATCAGGGTCGGCGGCGCAGCCGGTTCCGGACACCGGGGCGTCCCTGGGGGAGGGACAGGGATGCAGCCTAGCGCCCCTGGGAGGCCCCCTCCCAGTGCGCCTGCTGGAGAGAGACACTCGCCATTGCCGGTGCCCCAGATGCTTAGAGGAAGTCAAACTCCAAGACCGCCCTCTGGAAATGTGTCCAGTAGGCCAGCCAGGAAGAAAAGCTCATCTCTAGAGAGGGGATCGCGTTATTCTACAAGACCTGTTTTCTCGGACTGCTCATTAAAGCAAAAAAAAAAAAAAAAAAAAAAAAGCAACCCCACAAGGTTCAGTCCCGGAGCATCCTCTAGGGTCTGTGCCACCTGACAGAAGTACAGGGCTCCATCCTGCCCCACCCCACCCCCTGCCTGGGATCCAGTGTGAGGCCCAGACTCTGTCCCTCCCCCTGGGCCACCGGGCCTGGCACACACAGTTGGCATTGGGAACATAAAGGATGGATTTGAACCCCCTCCTGGGCTGCTCCTTCGAGACCTGGAGACCTGTCTCAAGACCCAGCTCCAGGCAGACAGACATCGTTTCCTCCACAATCCCACCCACTCTGGGGACATCTGCAGGGCCTCACCGATGGGGCATGGGAGGCCTGGCGGCTCCCAGGAAGCCACCCTCAGCCCTCACTGCCCTGAGCTCTTCACCTCCACTCTCAGACCTGAGCCCAGCCCACCCTTACTGATGGGGCATCCCTCTTGTTCACCCTTCCTTCCTTTGGAGGCCACCAGGCTCTCCCTTGCGTCCCACTCCTGCCAGTCGGCCAGCCATTTCCCTGGGTTGAACTGTGGTCCCAAACCAGAATGATCTAGCAGTGCCCAGACCGTTCCACTCACCAATTTCTTCCATTCTCCTGTGGCTGGACGCCCAGTCATGCTGCCCAGACCCTCTGGCTCATTCCACAGCCCCAGGCTCCAAGTGTCTTCCACCCACATCTCCCTGCCCCCTCCACCCCCCAGGTGGCAGCCAGTCTTCCCTCCATATCTCCTGGACAAGGAGAGCCACCCCACATGTACACCTGGAGTGGCCTTCCCGTCTCTCGGAATCCTTCCATGCAGGCAGCATCTTGTCTTTGAGGAAAGGTCCCTCTTTTTTAAAATTCTTTTTAGAGGCCAGGCGCAGTGGTTCATGCCTATAATCTCAGCACTTTGGGAGGCCAAGGTGGGCGGATCACTTGAGCTCAGGAGTTCTAGACCAGCCTGGCCAACATAGCAAAACCCTGTCTCTACCAAAAATACCAAAAATTAGCCAGGTATGGTGGCACACACATGTAGTCCCAGCTACTCGGGTGGTTGAGGCGGGAGGATCGCTTGAGCCTGGGAGGTAGAATTTGCAGGGAGCTGAGATTGTGCCACTGCACTCCAGCCTTGGTAACACAGCAGGACCCCATGTCAAAAAAAATTATTTTTAGAGACAGCGTCTTACTCTGTTGCCTAGGCTGGTCTCCAGCTCCTGGCCGCAGGTGATCCTCCCACCTTGGCCTCACAAAACACTGGGATTACAGGCATGAGGCACTTTGGCATGCAAAGGGCCGCTCTGTCCCCTCCCCGGTGTTACCTGCAAGCACCTTTTCCTGGCCTTGGTGTGAGGCAGCCAGTCCTCTGCTCCCTGCCCTCCATTGAAGCCTTTAGCTCAGTGGATGAGGATTGCCCCCCCCTCTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGTGCTCTTGGCTCACTGCAACCTCTGCCACCACACCCAGCTATTTTTTTTTTTTTAAGACAGAGTCTCACTGTGTCACCCAGGCTGGAGTGCCGCGGTAGGATCTCAGCTCACTGCAACCTCCGCCTCCTGGGATCAGGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCACCATGCCCAGTTACTTTTTGTATTTTTAGAAGAGACAGGTTTCCACCATGTTGTCCAGGCTAGTCTCGAACTCCTGACCTCTAGTGATCCGCCCACCTCAGCCTCCCAAAGATGACAGGTGTGAGCTACTGCTCCTGACCCACATCCCCTTACCTTGCTCCCCTACTGGGAGGCCATGAATTCTGGCCTCTTTCATCTTGGATCTTTAAGTACCAAGTGCGCTAAGCACCTGTGTGATGGAGGAGGGAGGACGGAGGGAGCAAAGGTTAGCGTCTCACCCCTCCAGTCTCTGTATACTGCGGTCATCAGACCTGCATGCTCAATTCTGTTAACTATGGGGGTGGGGGGAGAGGAAAAATGCAGTTTCCAAATTACAGCATTTTCTATTATGTGGAGCTAACCTACGGATTGCAGCGTTTCTCTGAATTCTCCCCAAGGGAAGGAACGTCCCAGGGATGGAAGTGCTTGGATGCGGTGCTGCTGGCTGCGGATGTGCGCAAGGAGATGGGATGGAGAGCCTGAGTTGGCATTCGTATAAATGACCTGGTAATTGGCATCCCCTGGCAGAAATAGCACAGAACTGTTCCCAGAGGTCTTGTTGGCCAGGGAAGGCTGTGGCTTTGTAGCCTTGTTGAGAACAAAGGGAAAGGCGACACTGTTTTCCACCTCCAGCACCTTCCTGCGTAATTTCCAAATTGGGGCATTTTCAATTATGGGGGGCTCGACTCTGGCATGGATGGACTAAGTTTGGGGCATTTCCTCAGCTGCTGACCCTGTTAAGCACTCCCCACTCCACCCGTCCACCCCAGCCACGCTCCCTGGGACCTAGAAACACGGATCTGTGTGTAACAGCCTGACATAGACTTTCCGTGGGGCCTATGTGGGCCTGGACATAGAAGTTACTCTTTTCGTTTCTTTTTTTTCTTTTCTTTTCTTTTTTTGAGACGGAATCCTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCCGCCTTCTGGGTTCAAGCGATTCTCTTGCCTCAGCCTCCCGAGTAGCCGGGATTACAGGAGCCCGCCACCACACCTGGCTAATTTTTGTATTTTTAGTGGAGACAGGGTTTCACCATGTTGGCCAGGCTGGAAAAGTCACTCTTTTTGATGTCAAGTAAACCACAAGATGCCTGTGCCCTTGAAGCACGCCCTGCAGATTAATTAGAACTGGATCCTGGCGTGTGGCCGAGCAGCCCAGCTCCTTGGGACACACGCGACCGCCAATCCCCTACTTAGTGGAGATTTGGGTTTAAATTCACAAATCTTGACAGATCTGTCCTTCTGATGTTTAATCCGTGTTAGTCAAACCAGATGTTTACCAGGTGTGAGTCCAGGCATCTCCGCCTTCTGTTTCTCCTTAAAATGTGGTCATGTGAGTTGGTGGATTTCATTTTTCATCTTGCTAAAAGTTTGCCTTGTAGCTTGGATGTGGCTTTAGTTATGTAAGTCCAATATTTTTCTTAGGGTGAACTGTACTGATCAAAATTTAAGTTGAAGGCCAGGTGCGGTGGCTCACACCTGTAATCCCATCACTTTGGGAGGCTGAGACGGGCAGATCACCTGAGCTCTGGAGTTCAAGACCAGGCTGGCCAACATGGCGAAACCCTGTCTCTACTAAAAATATAAAAATTAGCCAGGCATGGTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCTTCAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAAATTGCGCCACTTCACTCTAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAATAAATAAATTTAGAAAATAATAAAATGTAAGTTGGATCTGTGAAACTAGCAGCTACTTGGAAATGTTTATTCCATGGCTGGCACCTGGATGTTGGAAGAAGTCTTTCGTCTTCAGATGCATTATCTTATTCAAAAGCCCTAGAGGTGAGGCCGGGTGCAGTGGCCCACACGTGTAATCCCAGCACTTTGGGAGGTGTAAGAGGGAGGATCACTTGAGGCTAGGAGTTCAAGACCAGCCTGGGCAATATAGTGAGATTCCCGTCTCTAGGAAAAATTAAAACATTAGCAGGCATGGTCCTGTGCTTATGGTCCTAGCTCCTCAGAAGGCTGAGGCAGAAGCTTCCCTTGAACCTAAGAGTTCGAGGCTGCAGTGAGCTGTGATCGTACCACTGCACTCCAGCCTGGGCAACAGAATGAGACTCTGTCTCTATTTTTAAAAAAAGTAGGCTGGACGCGGTGGGTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACTCCATCTCTACTAGGAATACAAAAATTAGCCAGCTATGGTGGCGGGCGTCTGTAGTCCCAGGTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAAGCCGGGAGTCAGAGATTGCACCACTGCACTCCAGCCTGGGCAACTCGGCGAGACTGTCTCAAAAAAATATATCAAATCAAATAAAATAAAAATAAATAAAAAGTCCTACAGGTGGAAATATCCCCATTCTCACGATGAAAGAGCCAGGTCAGAAAGGTCAGCTGTCATGCTCAGAATCACACAGTAGAGTCAAATCCAGGTTTCATAACTTTAGGTCCTGGAAGGCTGGGCGCAGTGGCGCATACCTATAATCCCAGCAGTTTGGGAGGCTGAGGCAGGCAGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGATGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGGACACATAATCCCAGCTACTCAGGAGACTGAAGCAGGAGAATTGCTTGAACCTAGGAGCTGGAGTTTCCAATGAGGTGAGATTGCCCCACTGCACTCCAGCCTGGACGACAGAGTGAGACACTGTCTCAAAAACAAACAAACAAAGAAACATAACTTTAGGTCCTGGGCACTTTCTAAACCCCTGGGCTCTGGCGTGGGCTGTATATGGCAGCCTCTGTAGGTTGAATGGGCTTGGAGTCTAGCTCTTCCAGGCCGCAGTAACCTAGGATGTCTGAGCATGTCTCTCTCCCACCCTTAG
Seq C2 exon
CCTGGCTCCCACCATGAGTGCTGAGCTTAACGTGCCTATCGACCCCTCTGCTCCTGCCTGCCCTGAGCCCGGCCATAAGGGCATGGATTACCGGGACTGGGTCCGCCGCAGCTACCTGGAACTGGTCACCTCTAACCACCACTCGGTACAGGCCCTGTCGTGGCGGAAGCTCTACCTGAGCAGGGCCAAGCTGAAGGCCTCCAGCAGGACCTCCGCCCTCCTCTCCGGCTTTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160991-ORAI2:NM_032831:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.022
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF078567=Orai-1=PU(17.8=45.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)