MmuINT1026003 @ mm10
Intron Retention
Gene
ENSMUSG00000039747 | Orai2
Description
ORAI calcium release-activated calcium modulator 2 [Source:MGI Symbol;Acc:MGI:2443195]
Coordinates
chr5:136161487-136170713:-
Coord C1 exon
chr5:136170538-136170713
Coord A exon
chr5:136161725-136170537
Coord C2 exon
chr5:136161487-136161724
Length
8813 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TCACGTCTCTTCCTCCCCAGCCT
3' ss Score
8.33
Exon sequences
Seq C1 exon
ATGGGTCACGTGACGGCGGCGCAGTGTTGCCTAGGCAGCGGCTGCGGGCGGAAAGAGGGAGGGGGCCGGTCCTCCGCCCTGGCCCGGCCGCCGGGCCACCCGGCCGCGACACAGACGCTAGCCACGAGCCGGAGCCGTGAGCTGGAGCCAAGCGCGCTGAGGGCTGGACAGTCAGG
Seq A exon
GTGAGTGCTCGGCCGCGGGTGGGCCCGTCCATCCTTGTCTGGGGGGGGGGGGTGTCTGAAGGGGAACAGGAGAGGGTCCCCTCCTAGCTAAGGGGCGCGGGGAAATTGGATCAGGGACACTGGACAGGAGGAGATGGAGCTTCTCCCTGGGCAGGCATGGCGTGGAGAGGAAGGGACAGGCTGATGAGAGGCAGAGGGATGGCCTGGTGACCCCAATCCCTTGACTTCCTTGGTAGAGTGCAGTGTCAGAAGACTTGGATCGCGCGGGGCTGCCAGCTGATTCTCGGGTCCTGCAGTCGCAGGGACTTCCCTAGAGTATAGGACAGGGATGCAGGTGGCTGCTTTTGGCAGGCCACTGCCACCTCTCAGGCGCGTGGGTGACAAGACACAGTTCCCGTGCCCCAGATGTTTAGAGGAAGTTAAAACAGGCAGACTCCATAACCTGCTGCCTGAGACAGTTTCAAACAAACCTGGCAAGAGAAATGCTCGTCTAACAGCCTTGCCGTGGGTTGGCTTTTTTTTTTTTTTTTTAATTTTTTTTGTCAGACCTAATCTTTCTGCTGCTCCTCATTTTAATAATAATAATAATTTTTTTTTTAAAAAAAAGGTTCAGTCTGCCTAGCAATCTTAGAGTTGGTGGGTGCTATCTGACAGACTTATGGGCTCCATCTTGTCTCACCGCCCCCTCTGGCCTGAGCTTGGAATTTGTAGGCCAGACTCTGCTTCTCCCCATGGGGCAAGGGTTGGACCAAGATAGGCCCTCTGAGTATAAGGAATGGACTTGTGACAGAAGCTGGTGATGCCTGCCATCCTGGCACGCAGGAGATTAGGTGAGACAGTCCCAAGTTCCAAGCCACCCTGGGCTACACAGCAAGACCCTGTCTCAAAACAAACCCAAAAATAGAAAGGGGATCAGCGGGAGCTGTGGATGGAACCCCTAGAAAATCTGCCTAGCGTGCAGGAACCCTGGGTTCTAACCCCAGCACCATGCAAAGCAGGTGTGTGATCTCAGCCCTTGCAGCATCCAGAGTTCAAAGCTATGCTTGGTTATATTTTTGGTTGGAGGCTGACCTGGCCTACATAAGGCCCTATCTAAAATAGAAGGAAGGGCCGGGCGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAAAACCAAACAACTAAAATAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGCTGGGTGGTAATGACAACTTGTAGGTAGTGTGGATGGATGGATGGATCTCTGAGTTTGGGATCACTCTGGTCACAGAACAAGTTCTAGGACAGGCAGAGCTCGGAAAAATGAAAAAAAAAAGAAAGAAAAGTAAAAAGAAAGAGATAAGAAATAAAGAAGAAAGGAAAGAAAGAAAGAAAAGGAAAGAGAATGAATTTGAGCCTCCTGGACTAATACAGGGGAAGGGTGTCTCATCTCCTTATAGGACCTGCAGGCCCAACACGATTGAGCGGGAGGCAGACAGCTCTCCACACCCACCCTAACCACTCGGAGCTATTTGCATATCCTCACTCAGCTGCACACTCGGACTGGAACGCAGGGGCTTGCCTCATTGCGGTCCCCCAGAAAATCCATCTTCTTCACATCATGAATCCTTTCCTTCCTTTGATCCCCTGGGTCTGGAGTCACAGACAGTCGTTTGCTACCATGTGGTTGCTGGGAATGGAACCTGGGTCCTCTGGAAGAGCAGCTAGTGGTCTAACCACTGAGCCCCCCGCCCCCCCCCCCACACAAGCCATCTCTCTAGATGAAAGGTAGTCTATCCCCAAGAGACTTGGCAATATCTGACTTCCAGTTGCAGTCTCCCATCATGCCCCTGTGCCCTGGCACTGCTGGAGAAAGTCCAAGAAAGTCCAGCATAGCCTTACTATTTAGCTCTGTGCTGCTGTCCCAGCCCCCCAGAGTCTTCTATCTCTTTGTCTTCAAGCAGTCAACCATCCTGCCCCATTCTCTGGAGGATGAGCGCCTTCCTGCACATGACTTCAGCTTCCTGCTTCTCAGAACCCTCTCTGTGGGCCACATCTTGTCTTGGATAAAGGGTCTGTTTTGGTTTTGTTTAAGATTTTATTTTTACTTGTGTGTGTGTGTTTGTGTTCATATGAGGGCGTGTGCACATGAGTGCAGGTACCATTGGAGGCCACAAGAGGGCAGCAGACCTTCTGGAGCTAGACTTACAAGAAGTTGTAAACTGTCTAACTTGGGTGCTGGACACCTAACTCTGGTCCTTTGTAAGAGTAGTAAATGATTTTACCCTCTGCGCCATCTTTTAGTATGCAAAGGGTCTGTCTAGGACATGTTGTCTTTTCTACCCATGTCCATATGCCCCAAAGTTGGGCTTGCTTGTGACAGGTAGCCCAGCCCTTCTGTTTCCACCTGACCATGGAGCAGGGAGCCAACCGGAGACGTATGTTTCTTGCTTATCTGGCTCCACTATTGGACACTGAGTTCTTTGGAGGCAGAGATTCTTTCTCTTGTGGGGTTTTGATCTGTATGGTTTTTCACCTCATCCTACATGAGCTGATCCTGGAAACCTGACTGGAGCAACAAGGGAATGAAGAAGGGAGAGACACACAGACACAGGTACAGGAAGGCTGGGATTAGGTGGGCCATGCCCACTGTGGTGGAGCAGTGCCAACTATACAGTAACCCAGAACCTCGGTGAGTTTATCATGTACAGTACAAGGAGAGCGGCTCACGGGGACGTCTCTCTGTAAGGGCGCAGCCACATGGACCTCACCCTAGGGAATTTCCCAAAGCTGCAGGACCTGGGAAATGGCTGGCTACCCCAATCTCTGTCCTCTGACACTGCACCCTAGCAAGTTGTCAAGGGATTGGGCTCACCTGGCCGCCACCTCCCAGGTTGCTTCACCCTGGAGGAGGAAGCTGCAGTTGCCAGTTTGTGCACTCTGCTCAATCCTGTATAAACACTCTCCTTGGACCAGAGAAAGCCTTTGCCTTGCCTCTGAGCTTCACCTGGCGGAAGGCTTTGCCAGTTCCCACGGGTCTGAGGCCTTGGCCCTTGTTAATAGAATAGACTTACTCCAGGATTCTGTGGCTCCCCATACTTTTTTGTTTGAGTTTGGGGGGCTGTTTGTTAGTTTGATTGTTTGTTGATTGGCAGGATTTCCTACAGTCTAGGCTGAGCTGGAATGTATAGCAGAAGATGGCTTTGAACTCCTAATCTTCCTTACTCCATCTAGTTTAATGCCATGCTGGGACTCCAACCTAAGGCTGTGTAAACCTTTTACCACTGAGCCACACCCCCAGCCTCTCCCTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCAGCCCCTCCCTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCAGCCCCTCTCTGAGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGTCCCCAGCCCCTCCTTTACTTTTGATGCCAAAGTATCCATGTGATTTTGAGAGCATCATGGGTATGAGGTAGTAAAGGGTTTTTTCACAGGGTTCTCTCTCTCTCTCTCTCTCCCATCTCCTACCCTCCCAACCCCCAGACTTCAGCCTTAGTCCTGTGCTGTATGAGTGGGAAGGAAAAGAAAAAAGTTCATTTCCAAATTGTGATATGTTCAGTCATTTGGAGCTAACTCATGGAGTGGTGAGAAGTTGCCTGAACCTTCTCCAAGGGAGCAGACATCCTTGAGGAAGTGATTGGTCACAGTCCTGCTGGCTGCAGGTGTGGGTGACATGTGACCCTAGTCCTCAAGTTTGCATTCCTATAAACAGACCCAAAAGCCTGGGATGTGACTCAGCCTGTCATCCCAGCACTCAGAGAGAGAGATGGACGGATGGATCAGTGTAGCGCTGTCTGATGTGGATGCTACACAGCAGGGTTCAGCCAGCCAGAGTTAGTGAGACCCTGTGTCTTACACATTGCACAGAAAGAACAATGTCAGGTAGCAGCGGCACACGCCTTTAATCCCAGGACTCAGGGGAAAGAGGCAGGTGCTTCGCTGATTCATGGCCAGCCTGGACTATAGAGCTAGTTCCAGAACAGCCAAGGCTACACACAGAGACCCTGTCTGGAAAAACAAACAAACACAAAGGAAGTAAAGGCATTGTTGTTAGTGGCTGTTCCCCAGAGGGACATGAACACAGAACGGTTCCTCAGGGACCCTTTTGTTGGCCAACGATAGCTGAGGTTTCTACAGCTTGCCTGAGAACAGGAGGAAGGCAAGACAAAGAACCCTTCCCAGCTACTGTCCTTCTTGGTCCTCTTAGGTGTTTGACATGGGTGTACTGAGGGGTGCGTCCTTCACCGCTGACCCTCACAAACATCCCAGCCTCTTATGGGACCATGGACTCTGCCCTAATGTTTCTCTCTTAGTCTGTCTCTCCCTCATTTCTTTTCCTCTGGTTTCTCGCTCCTTTAAATGACAATGTTGATTTTGCTTTATGTCACAGCACCCCTGTTAGGATCGGAGGACAGCTTTCAGGAGTCAGTTCTCTCCATCCACCGTGTGGGCCCCAGGGATAGAACACTGGTCCCAGGATTGGTGGCAAGCAGCTTTACCCACTGAGATATTTCACTAGTGTGTGTTCTCTTTCTCTCTCCCTCCTTCTCTTCCCTCATACACATACGCACATGTACACACACACACACACACGCTCATGTGCACACACACGCAATACTCTTACACACAAACAGCACACACATACACACTCATGCACATACTCACACACACTTGAGTGTGTACACACACATGTGCACACACACATGCACACACACACTCACGTACACACGTCTCACTCTGCAGCCTACACTAGCCAGAAGCTCTCAGTCTCCCTGACTCAGCCTCCACAGGGCTGAGCTGACAGACAGGCCTGCATCACCACCTGCCCGGCCATAGCTTGCTAACAGCCTTAGGTAAGCTTTCCACGGGGGCTGGTGGCTCTGAACACAGGGTTATTGTCTGATGCCAAGCCAGCCACAAGGTGCTCTTGCCCTTCAGGCTTGTGCTAGAGAGATTACCCAGCTGGCTCCCGCCTGCAGTGCGCCGCCACAGCCACAGGCTGCCCTGAAGGAAACCTGCCAGTCTTCGCTTAGAATTAATTAGTGAGGATTTGGGTTTAGAGTCAGACATCTTTTTTTTTTTAAGATTTATTTTTTTTTATTATGTTAGCTCTGTGTGTATAGGCACATAAATGCAAGTGCCACCAATGTCTAAGTCCTCTGGAGCTGGGCTCATACATAGTCTGTAAACCGCCTGAGGTGGATGCTGAGAACTGAACTCAGGTCCTCAGGATGGGAGTACCATGGGGACTGGAGAGCCTGTCACAAAATTAAAGTGGAGAGCAATAGACACACAGACATACACACTCACAGATCCTCACATACACACACACTCACACATACACACATACAGACACACATACACACACACTCACATACACACACAGACACATACACGCACTCATACTCACAGACACACACAGATGCTCATATACACACAGACATACACATAGACACTCACATACACACTCACACACATAAACACACATATACAGACATATACACACACAGACACACATAGACATTCACATACACACACACACATAGACACTCTCACACACATACATATACAGACAAACACACACAGACACACAAAGACATTCACACATACAACCATACCTCACAGCACAGCATGGCCTCCAATTTTAAATCCTCCTGTCTCAGCTCACTCTTGATTTTAATTTTGCTAAAGGGTTTCCACTGAAGCCCGGGTGTGGTTCACCTTAGAAAGTGACTGTAGGTTCTGGTGGTGACGTATCATGACTGCGATTAGATTGGAGAAGCTATGAGCTGCTGAGAAATGGCCTTCCCTCACATTGCAAGCAGCTCTGGGTGCTCAAGAGTCCAGCAAGTAGCCGGGCCTGTGAGCAAACCTGCAATCCCGCCTAGTCCAGAAGCTGAGGCAGGAGGCTCAACCTAAGTAACTTATCAAAACTCTGCCTCACAATAAAAAAATAAAAAAGGAAAAAGCGAGCAGAAGGGTGGAAGGCTGGTTCAGTAGAGAGCACTGGCAGCTCCCGCAGAGCCTCCCATTTGATCCTCGGTACCCACATGGCAGCTCTCAGCCATCTGTCCCTCTGGCCTCCCCTGGGCACACGTGTGTACATGGTACACAGACGCATGTGATAGCAAATGAAAGAGAGACAGAGACAGGGACAGGGGGGAGGGAGGGAGGGAGGGAGGGAGGAGGAAAGGGAGATTGAGATTATTTGAACAAAAGTATACCTTATGCTTGTCTAGAATCCCTCAGTTGAGGGGGCTGGGGGCGTGGCTAGAACATGTGCCTAGAGTCCCCCGGGGACAGGCTGAGGCATAGCTCAAGGGAAGATCACTTGTCTAGAGTCTACCAATATGCGATGAGTTCTAGCAAGCACTCTATTGCAGAACACTGGCTGCTCCCCCACTCCCACCGTCAGCCCGCTGGCTCTTTCTGAATGTGTCTGTTCCCTGTTCCTTGAAGACTCTGCCAGGCAGAGGAGTCAACAGGTATTTTCTGTCAAACTTTGAACTGCAGTCACACAAAATAGGCCCCATCCTGAGTATCAGGAGGGAGGTGGGTCAACAGCTTGGCCATGGTGGGGCCTGGCATTCCTGACCCGACCCTCCTCTTCTGCAGAGAGCCCTGTGTTCTGTCTTGCAAGACTGCCTTAGTGACCAGGACTCCATGCCCAAGCTACCTTTGGGCCCCTTGCCTCTACCATTGGACCTGGAAGCCAAGCATCATGGTGCAGGCCTGCAATTCCAGCACCCAAGATGCTGAAGCAGGGTCATGAGTTTGAGGCCAGCCTAGCCCAGAGCAAGCCATTATCTCAGAACACAGGGCTGGGGAGATGGGTCAGCCATAAAGTGCCTGCCATGTGGGAAGGCCTGAGTTCAGTTCCCAGCGTCCGTGAACAGCTGTGCATCTGTAACCCCTGTGCTCAGGAGGTGGAAGCAGGAGGACCCCTGGGACTGGACAGAGAGCCAGTTTAGCCAAGTTGTCGAAGTCAGGATTCAAGGGGTAATCCTTTCTCAGTTATCAATCGGAGTCTGATTGAGAAAGATACAGTATCCGCCTCTGGCTTTTGTCTGCCCATGTACCAAACATATTCACGTGTACACACACGAATCAGGACACAAACACACACATGCACACAGTTCTAAGGTTTTTCTTTTTTTTTTTTAAACAAACAAAACAATACAGATGCTGGCGATGTAGCTGTCCACCTAGCATAATAAAGGCCTTGGTTTCATGCTTGACACTAAACTAGGGTGATGGTGCCCAGGCCTTTGCTCTGAGCCACTGTGGTGGTGGAGGCCAGAGGATCCTGTCATCCTTACCTCAGCCTGCGTTAGGTTCCTGGCCTACTGGGCTCCACAAAACCCCGTCTCAAAGCAACAGCAGGGAAAGCAAGAGGGCCTGCTGCCAATCAGGAGCTGAGTTTGATCCCAGGGAGCCACATGGTGGAAGGAGAGAACCAACCCCGGCAAGTTGTCCTCTGAAATCCACTGCATACTGTGTCAGAGGTGTGTGTGTGTGTGTGTGTGTACATGTGTGTGTTGTATGTGCACTTACTCTCAACACATTCACAAATTAAAATATACAAAAAAATGTAAAACAGGGTTGAGGATTTAGCTCAATGATAGAGCACTTGCCTAGCAAGTGCCAGGCCCTGGGTTTGATCCTCAGCTCCAGAAGGAAACACACACACACACACACATATATATACATACATATATATATTTAAAACAATGTAAACCAGGACCTGGAGCGCCATCTCAGGCTCAGAGCTCTTCCTATTCCTGCTGAGGACCCTTTATTCCCGGCGCCCACATGGTGTCTCACAGTTATTTGTGACTCAAGTCCCACGGCCTCTGATGGTCTCTTCTGGCACCAGGGACACATATACACTTACATACTTGCAGAGAAAACACCCATCCACATAAAATAAAGCAAATAAATGTTTTTGTTTTGTTTTTCAAGACAGGGTCTCCGTAGGTAGCCTTGGCTATCCTGGAATTCACTCTGTATACCAGGATGGCCTCGAACTCAGAGATCTGCCTCCTGAGTCCAAGGATTAAAGGTGTGCATGACCACCACCAAGCTAAGAAATACATATGTATGTATTTTAAAGGTAGACAGAATTAAAAGCAAAGCCTGGGGCTGCTGAGATGTCCCAGGAGCTAGGAGCGGAGGTCAGGTCCCGGCACCCACCTAACAAGTTGGGCATCCTATGTGTGTCTGTAAGTGCAGCTTTGAGCGGGGCAGAGCCAGAGGAACACTGGGGCTTACCGAATCCCAGCTTGGTGGAAAGAAGGTGAGCCCTTAATTGAAAAAGACCCTCGAAGGAGTAAGCAGTGTGATAAAGAAGGCTGCCCTAGGCCCTCTTCTGGCCTCTGCATATGTGCAGGCTTATGTGCACATGTGCACATACACTTACACTGGCATGCATACACACATACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACATAATATATCTTAAAACACAAAACCACAAACTCGAGTTTTTGCACAAGAACTATCTAAGATGCTCCAACGTGTCACGTCTCTTCCTCCCCAG
Seq C2 exon
CCTGGTCCCCACCATGAGTGCAGAGCTCAATGTGCCCATGGACCCCTCTGCCCCTGCCTGCCCTGAACCCGGCCACAAGGGCATGGATTACCGAGACTGGGTCCGGCGCAGCTACCTGGAACTCGTCACGTCTAACCACCATTCGGTGCAGGCACTGTCCTGGAGGAAGCTCTACCTGAGCAGGGCCAAGCTGAAAGCCTCCAGCCGGACCTCAGCCCTCCTGTCTGGCTTCGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039747:ENSMUST00000041048:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.139
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF078567=Orai-1=PU(18.2=45.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types