BtaINT0105777 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012050 | ORAI2
Description
ORAI calcium release-activated calcium modulator 2 [Source:HGNC Symbol;Acc:HGNC:21667]
Coordinates
chr25:35119828-35126594:-
Coord C1 exon
chr25:35126009-35126594
Coord A exon
chr25:35120066-35126008
Coord C2 exon
chr25:35119828-35120065
Length
5943 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
AGTGTCTCTCCTGCCCCCAGCCT
3' ss Score
8.08
Exon sequences
Seq C1 exon
CCATAGGAGGAGTGGAGAGGAGACAGCGGGAGAAAGAAGGGTGTCAGCAGGGTCAGGGAAGTGCTGGGGACTGAGTGAGGAAGAAGGGTCAGAAAGCAGGATATCTGAATTTAAGCAATCACACTGGGAATTCCCCAGCAGTCCAGTAGTTAGGACTCACTGCCGGGGCACAGGGTTCGGAAGTTCACAGAGGGTGATAATAAGCACTAGGCTTTAGGAGTGAATGGTCAAGGGACTGGATACACTGTCCACACCGGCTGGGAGGCCATCCTGGCTAGGAGCTGGGGAGGGAGGGAGACAGCAGGACCACAGTGTTCACGGAACAAAGGGTCACAGTGGATGAGGTCACCAGTGTGGCAGTGACCTCTGGGACATGCCTCCCAGAATTGCCTTTTTCAAATGTGGGGTGGCCGAGGCCTCAGAAAAGGTGGTGACTTGCCAGACCACCAGCCACGGGAGTGTCAGCACAGACTGGAACCCAGACCTCCCCGCCGAGCGGCTGGTACTATGCACCTTGACCTGAACCACCTCGGCTTCTGCGTAAGCCCCATGCAACAACCTGGGCACCCGAGTGGGCTCTGCAACT
Seq A exon
GTGAGTACCGGGATCATTAAATTTTTCTCCTTTCAACTTGGTGCTGTCAGCATGCTTAATCTCACAGGGTGGGGAATGCCGTTTTCTGGGTTTGGTTAGTAAACGAGCTCTGGAAAGCCCTGATAATTATGACTTACGTTCTACTTCTGCCCAGACACGCTGGATAAATGTGCCTGGGTGTGGGAGCGTGGCTACCAGGCCTAGGAAGCGTTCTAAAGGATGTGCAATCAGGGTTCAGAAGTGAGAACTCAAGCAAAGGACTCTGTTGCTCAAAGAATGTTCACCTGTGATGCAATTACTGCCGTTAGCAAAGTGTTCAGAATGCTTTCTTCCTTTTTGAACACCAAAAACATTTTATATTGGGGCACAGCCAATTAACAATGCTGTGGTAGTTTCAGGTGAACAAATAAAAACATTTTTTTAAAAGAATGTTTTCCTCCTGTTTTCCAGTCCACTTTATCAACTGCCAGAGGGGTGGAAGCCACACTATGTTTTTTGTGGACTTTGCTCCCTGAAATACAACAATCTCTTTCCTGTTGCCATGGGTGGGAAGGGCAGTAATCAGACCCCAGGATTTTCCTCATTCCTTTGTTAGGGCGGTAAACACAGGGAAACTAGCTTAGTCCGCTCTTAAGTGTCCTCTTGGAATAAAAGGTGTCATTCTGGCTCTCAGCATGGGTCTTGAAGTATAAGTGGATCTGGCCTGGCATACCTGCCAACATTTACTCATCCAATTGTCAGAAAACTTGGACTGGGCGACAGGAATGGAATTTTTCTTTTTTCTTTCCTTTGGATAAATGTGTCACGGTGCCATGCTGTTGTGACAGATGGAAAAATCCTATGTAGGGCACGCAGGAAGGGCTCCGAGGGCCCGCCTGGCACGGTGGGTGGATGGGAACCCAGCTCTCCTCTCAGTGAGTTACCCATATGCACTTCCTGAAAAGACCGTTCCTGTTTGAATGTCTGGGTTACAAAACCTGAGAGTTCACCATTCCCGGTGAGAGGTTCCCTGCACCCTGGAACGGAGGGAGCCAGAGGCACCGAGGAAAACCCTTCCCCCCCAGCGCTCTGCCCACCAAGCATGCCGCACTCGGGTGAGGACCCCGCAGGTCTCGCTGGGCCTGGTGGGTTGGGCTGCGGTTCCGGGTGACCAGCTCCGGGTGCGTGCTCGGCCTGGGGTCGCTGTCCACCTGGCAAATTGGGGCGTGGCCGCCCACACCTTCCCCAACGGACCCTCCTCTCCGCTATACACCCCTCCTCCCCCCGCCACCCACAGTCCGCCTGGCAGACTGATAACGAGATCCCACCGGTTCACAGGGTCAGTGACCGGTCCTGGGCGTCCTCCGGGGCTCACCCTGGGAACCTGGTGCTCCTGCTCTGTGTTCAGGCCCACACGCGTCCAGCAGACTAGGGCTCACCCTTCCCTGGACTTGCGGGCCAGACCCAGGGGCAGAGAAAGCGCAGCTTCCCCATTCCGTCGCTGGGGAGGGAGAGCGAGGGATGCCCAGGCTTCCGGCTCTCATCACCACCGCGGCGCGGATCCCTGCTCACGGCCACCCGCGACGCGCCCAGTAACCAGGAATGATGAGCACCCTTCGGGTTTACCACGAAGGCCACCGTCGCCAGCCGGCGCGGATCGACCCGGCCCACGTTCTTGCCCACCATCGGCGACAACATGATGGCCAGCACGCCCACCGGCGCCAGCGCGATGCCCGCCCAGGTGGCCGTGTAGCCCATGTACTGCTGCAGCCACAGGGGCAGCAGCACCACGTTGCCGAAGAACAGCATGTAGGCCACCGACAACGTGAGCGTGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGGGACCCCGGGGGACCCCGGGTAGGGGGGCTGTGCGCCCCGCCCCTCCTGGCCCGCAGCATCACGTGGCCCACGGCGCCCCCGCGGCCGGTCACGTGACAGCCGCGCCGTTGCCCTGGCAGCGGCTGCGGCTGGGCGGCGGGGGGGCGGGTCAGCCGGCGGGGGCGGGGCCCGGGGGACCCCGCGAGACGGGCGGAAGGAGGGAGGGGGCCGCGCTCGGCGCCCCGGCCGGGCCACCGGGCCACGCCAGAGCCGCCAGCCGCGCGCCCGAGCCGGAGTCAGGCCGGGAGGGCAGAGCAAAGATCGGTGAGTGCTCACTGCGGGCGTCGGGCGAGGGCGGCGGGATCTCCGCCCCGGCGGGGGGTGAGAGCGACCGGAATTGCCCCCGGAGACCCCAGCTTCCTCCTGGGCAGGCCTACGGAACGACTGTGAGGTTGGGACCCCAAACCCGCGGGATCCCCGGGCGGGGTGCGGAGCCGCCGGGATGACTGGGAGGTTGCCAGGCGTGGAGAGATGCGGGCCGCATGCGGGTCCCCCGGCTGCTAGGGGGTGCTGAGGCGAAGGAACAGGGTTGCAGGCGGGTTCCTCCAGGGAGACCCAGGGGAGGAGGGGAGCTGGGCCCTCCCGTGTGCGGGTGACAGAAAGAGTCAGAAACAGCCGTTTCTGCGTGGCATTCGCCATTGCTCGTGCCCCAGATGTTTAAGGGAACTTGACAGTCAAACCCCCAAACCCACCTCCTGGAAATGTTTCCCACGGCCAGAGACAGCGTCACGGTAATTCTACGAGATCTTTTCTCTGACCGCCCCTTATATAAAAACAAAACCAAAAGACCACAAGGTTCGGCCAGGAGAGCATCCTTTGGCGCCTCTGCCACCTGACAGAAAGGTCAGGCTCCATCTTGCCCTGCCCCACCCGCTGCCTGAGCCGAGCCCTGGGGTCTGAGGACCAGACTCTGCCTCTGGTGGAGGCTGGGTGGGGAGGAGGCTTGGCCCGGGGTAGGACGCTGGGGCTGGGGGGCCGCGGATGGGTTTGAATCTAGTCTGAGCTACTCCCTCTGCAGGAAGTGGTTTCTCTGTCCTCGGGACCCACAGGCCCACCTCACAACCCCAGCTCCAAGCAGACAGACAGCCCTTGCCAAATCCTGCCACTGGAGACATCAGTAGAGCTGAGGCCGCCCTGCCACCACCCAGGCCACCATCAGCCCTCACTGCCCATGAAGTTCTCCACTCTCCAACTTGGGCTCAGCTCACCTTCACTAACGGTCCCCATCTCCACCCCATTCATCTTTCTGGAGGCCACGAGGCCCTTCTGCCCTTCCCAGTTGGCCAAGTGTTTGAGCACACAGACCAGATGGAGCCCTGATGGCTCCTTCACCAACTCCTCCCAAGCCTGAGCATCTGGGCAGCTCTGGGCAGCGCCAGGGCAAGTCCAACACAGTCATACTGCCTGGGCCACACGTACTCCTTGAATCTTGCTTCCACCACTGCTCCCCTGGCCCTTCTGCAGCCAGCCTTCCTGCCCTGCCTCTCAGACCCTCCCCAAGTGGGCACCATCTTGTCTTTGCAGGAGGGTCCCTCTTTGCCAGCATGACCTTTACCAACTGTGTCCTGGTCCCTGCTCCCTTACAGGGACCCTCTCCTGGCCCAAAGAGTAGAGGCAGCCAGCCAGCGCCTTGTCCACCCCCTCAGCCCTCACACTGGCTCCGCTACAGCAGCATTTAACTCACTGGACAAGAATCTCCCCCGACTTAGGCCATTCCCCCACTGAACATCCTCATCTTTCATCTTTGATCCTTAAGTACCAAATGCAGCCTTACCTTAGGTCCCAGGAAGCGTTTACTGGATGCAGGGCGGAGGATGGATCCTCTGAGGGGCCAAAGGTTGTGCCTTTTACCCTTCCATAGGCTGGACAGTGTCTTCATCAACCCCACGAGCTCACTTCTGATGTAGTGGAGCAAAAAGAGGGGGGAAAAAAATGCATTTCCAAATGATGCCATTCTAAATGATTTGGAGCCAGCCAATGGATTGGTTAGTGAACATTTCAATGAATTCTTCCCAAGGGAAGGTACATTCCTGTGATTGAAGTGCTCGCAAGCAGTGCTGCTAGCTGCAGATGTGGGTGGGGGCCGGGTGGTGGTGACCAAGGTTTCCAAGTCGGCCCTCTTGTAAATGACCTAGTAATTGGCATACACAGACACACACAAGTCGCTCAGTTGTGTCCGACTCTTTGTGACCCCATGAATTGTAGCCCACCAGGCTCCTCGGTCCATGGGATTTTCCAGGCATGACCGGGCAGAAAAAGAAGAGCACAGAGCTGTTCTCTGGGGGCCCTGTTGGCCAGTAAAAGCTGTGCCTCCATGGCCTGGCACAAAACAAAGAGGAAAGGACCCCCAAAAAGAGAGAGCCTCCCCCCTCCCCAGGACCTTCCCAGAGAATCCACTTAGGGACTGGCATGGGCAGATCAAGTTTGGGGCATTTCCTCAGCCATGGACCCTGGTAAACACCCTTTTGCCCGCCCACGCACCCCCAACCTGGCTCCCTGGGACCTAGGAACGCTGATCTGTTTGTAATAGCCTTAAGTAGGCTTTTCACTGGGCCCATGCGGGCCTGAAGGTACAAGTTAATATCTGATGCTAAGTGAGCTGTGAGGTGCCTGTGCCCTTGAAGCCTGCCCTACAGATTAATTAGAGCTGATCCTGAGGGCTGCTGCAGGGCCAGTCCCTTGGGCCACACAAGACCGCCAATCCCCTATTTGGATTAGTGGAGATTTGAGTTTAAATTCACAAATCTCGACAGATCAGCCCTTCTGATCTTCATCCTGTGTTACTGTCAAACCACATGTGTACTGGGATGACTCGAGGGGTCTCCAGCCTCCATTTCTTGAAAAGAATAAACCCCCAAACCATGTTCGTGTCAATTGAGCAATTTTTCATTTTGCTAAAGGTTTCCACTGCACCTTGGATGTAGCTTCAGCAAGCTATAAGTCAGTTATTTTCAGGGTGAACTGTGCTGATTTAAATTGAAGTGAGATTTGAGAAATTAGCAGCTGCGTGGAAACACTGATTTCATGGTTGGCACCTGGCCGTTGGAAAGCAATTTGGGGTTTTTGGGCTCCATTGTCTTGTTTAAGACCCCAATAGGGTGGAGAAGGCAATGGCAACCCACTCCAGGATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCGAGCTACGGTCCATGGGGTCGCAGAGAGTTGGACACAACTGAGCAACTAACAGGGTGGGCATGTCTCCACGTGAAGATGAACAAGTTGGAAAAGTCAGGTGTTGTGTTTAGAATCGCACAGCTGGGTCAAATCCAGAAGTATCAGGTCCTAGAAGCTTCCAAAACGCTACAACTCCCTTCTCCTTGAAGATAGGCGTTTAGGTGCTTTCAGCCAGCCTTGGAATTCTGTTCACCCAAGAGCCACGCTCAGTTGGAGCTTTGAGCTCAGGAGAGGAGACCAGATACCAGCTTTGTGGAGAAACACTGGACGCTGCGGTGGGTCCTGAAGATGCACCCGCTTGAGCCCTTTCCCACAGGTGGTCCCTGCATTCCTGTGTGGGGACAAGCCTCGGAGGCCAGGCCCACCCTCGTGCACCCTGGATCCTGTGGCCCTGGTGCAGGGTGTAGATAGCGGGCCCCCAGGGAAGGTAGAAGGGACTTGGAAGTCTGGGTTCTCCACGCCCTGGGGGGATCCTCGGGTATACCGGAGTGTCTCTCCTGCCCCCAG
Seq C2 exon
CCTGGCCCCCACCATGAGCACTGAGCTCAACGTGCCCGTGGACCCCTCTGCTCCTGCCTGCTCGGAACCCGGCCACAAGGGCATGGATTACCGGGACTGGGTTCGCCGCAGCTACCTGGAACTGGTCACCTCCAACCACCACTCCGTGCAGGCGCTCTCCTGGAGGAAGCTCTACCTGAGCAGGGCCAAGCTGAAGGCCTCCAGCAGGACATCCGCCCTCCTCTCAGGCTTTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012050:ENSBTAT00000015982:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.040
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF078567=Orai-1=PU(17.8=45.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]