GgaINT0131993 @ galGal3
Intron Retention
Description
NA
Coordinates
chr19:408441-409143:-
Coord C1 exon
chr19:409010-409143
Coord A exon
chr19:408617-409009
Coord C2 exon
chr19:408441-408616
Length
393 bp
Sequences
Splice sites
5' ss Seq
TGGGTACCT
5' ss Score
1.54
3' ss Seq
TCCTTGTCCTTCTCTTCCAGTGA
3' ss Score
10.82
Exon sequences
Seq C1 exon
GATTCTGCGCACGGCGATTCTTACAGTCAAATATGCCCTTGGTGTCAAGATTGTGGTGAAGGGCAAGGAGAACCTCAGGACTAAGAAGCCTTGTGTACTTGTGTTGAATCACCAGAACTCCCTGGACGTTATGG
Seq A exon
GTACCTGGGGAACCTGATCCTGCCTTCTCCTCCTTGCTGCATAGTTATGAAATCTCTAATAGCACAGGCTGCTATAAAGTCCTTCCCACTTAGCCCCAAGCCCAGGGTGTGTTCTGAGGCAGAACAACACAGCATTGCTAAAGAAACTTCACTCATCCTTTCCAACAGAGCTGGGATGAGAACATCAGCAGACCACAGTGGTGTCACGGTTATTCAGGTTATTCAGTGTTGGCAAAAGCTCTGAGTGGGAGGTTGGTCTGCAGATGCCCCAAATCCCTTTTCCAACATCTTGTCGTTGGGTGGGGGCTGCAAGCATGATGTTCCCCAAAGCACAGGGCTGGAGGGAACCTTGTGTAGATGAAAACATTTTCTGTCCTTGTCCTTCTCTTCCAG
Seq C2 exon
TGATTATGCAGATGATACCAAATCGCTGTGTGCCCATTGGAAAGAAGGAAATACTGTACATGGGCCCCTTTGGCCTCGCATGCTGGTTTTCGGGCATCGTATTCATTGACCGCAAGAAGAGGGAAGAGTCCATCGCTGTCCTGACAGAGATGGCACACACCATGCGCAAAGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000984:ENSGALT00000001454:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=PU(22.5=63.0)
A:
NA
C2:
PF0155316=Acyltransferase=FE(45.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGGCGATTCTTACAGTCA
R:
ATTATCTTTGCGCATGGTGTGTG
Band lengths:
302-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]