HsaINT1003186 @ hg38
Intron Retention
Gene
ENSG00000204310 | AGPAT1
Description
1-acylglycerol-3-phosphate O-acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:324]
Coordinates
chr6:32170425-32171070:-
Coord C1 exon
chr6:32170937-32171070
Coord A exon
chr6:32170601-32170936
Coord C2 exon
chr6:32170425-32170600
Length
336 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
CCACTCCCACCCTGCCCAAGGGA
3' ss Score
3.57
Exon sequences
Seq C1 exon
GATCTTGCGTCTAATGCTGCTCCACATCAAATACCTGTACGGGATCCGAGTGGAGGTGCGAGGGGCTCACCACTTCCCTCCCTCGCAGCCCTATGTTGTTGTCTCCAACCACCAGAGCTCTCTCGATCTGCTTG
Seq A exon
GTGAGACCCCACCACAGGGCACACCTCCCCCAGCCATGCCTCCCCTCCTGAAACCTTCCCTAGAATATCTTCTCCTAGAGATCCTCAATTCCCCTTCCTCTGGGACATTGCCCCCTTGCCTCCCACTCAGGCCTTCATTCCCTGGGTAGAACTGCCCTCATAAGCAGGTTACATATACTTTTGGTCACCCTTTCCTTCACTTGGGGCCCCCCTCCCTGCCTAGTCTCCTCCTTCACCTCCAGTCCCTACCAGAGGGTGATGAGCTGGGTGAGGTGGGTTGCCTTCTGTGACACTCTGCCTCCACCCCGATCCTCACCCACTCCCACCCTGCCCAAG
Seq C2 exon
GGATGATGGAGGTACTGCCAGGCCGCTGTGTGCCCATTGCCAAGCGCGAGCTACTGTGGGCTGGCTCTGCCGGGCTGGCCTGCTGGCTGGCAGGAGTCATCTTCATCGACCGGAAGCGCACGGGGGATGCCATCAGTGTCATGTCTGAGGTCGCCCAGACCCTGCTCACCCAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204310:ENST00000336984:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=PU(22.5=63.0)
A:
NA
C2:
PF0155316=Acyltransferase=FE(45.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTTGCGTCTAATGCTGCT
R:
GTCCTGGGTGAGCAGGGTC
Band lengths:
310-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains