GgaINT0143692 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1582158-1582636:+
Coord C1 exon
chr27:1582158-1582291
Coord A exon
chr27:1582292-1582460
Coord C2 exon
chr27:1582461-1582636
Length
169 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGT
5' ss Score
7.7
3' ss Seq
CCTTCCCATCCATCCTCCAGGCA
3' ss Score
9.32
Exon sequences
Seq C1 exon
GCTCCTCTGTGCTGCGATCCGGCCCCTCAAGCACTTGTATGGCATCAAGATAAAGGTGCTGGGTGCTGAGCACCTGAATCTCAAGGAGCCCTATGTGATAGTTTGCAACCACCAAGCTTCCCTTGACCTCATGG
Seq A exon
GTACGTGCAGGGGAGGGGAGGGGTTCATCACCACATGGGCAGCCTTTGGGGTTGGGCTGAGCTCAGGGCTATGGGTGCAACGCAGGGAAAGGGTTGGGATGGGATGTTGTGGTTGGTGATGGGAACCATGGGGCAGGGGCTGATTCTTCCCTTCCCATCCATCCTCCAG
Seq C2 exon
GCATGGTGGAGGTCATCCCCAAGCGCTGCGTGCCCATCGCCAAGAAGGAGCTCCTGTACATGGGCACTGTGGGCTGGGCCTGCTGGCTCAGTGGCATGATCTTCATCGACCGCCAAAGGACAGGAGATGCCATCGATGTCATCTCCCAGACGGCCAAGACTATACAGCGTGAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000287:ENSGALT00000000376:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=PU(22.5=63.0)
A:
NA
C2:
PF0155316=Acyltransferase=FE(45.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCAAGCACTTGTATGGC
R:
TCGATGGCATCTCCTGTCCTT
Band lengths:
248-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]