GgaINT0132887 @ galGal3
Intron Retention
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:16823-17340:+
Coord C1 exon
chr19:16823-16947
Coord A exon
chr19:16948-17031
Coord C2 exon
chr19:17032-17340
Length
84 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGTTTTCCTGTCCTCACTAGGCG
3' ss Score
9.98
Exon sequences
Seq C1 exon
AGGAGATCTTGGACCTCACAGAGCAGCTCGGAGCCAGCCAAAAATCCATCCATGAGCTGGAGAAGGTCCGGAAGCAACTGGATGCGGAGAAGCTGGAGCTGCAAGCAGCACTGGAGGAGGCAGAG
Seq A exon
GTGAGCCAAGCTCTATCCCCACCTGTACCCATGTATCTCCACGTGTCCTCCTGGTGTCCACCAGTGTTTTCCTGTCCTCACTAG
Seq C2 exon
GCGTCTCTCGAGCATGAGGAGGGGAAGATCCTGAGGGCCCAGCTAGAGTTTAATCAAGTGAAGGCTGACTATGAGCGCAAGCTTGCTGAGAAGGATGAGGAGATAGAGCAATCCAAGCGTAACCACCTGCGGGTGGTGGACTCACTGCAGACCTCACTGGATGCTGAGACACGAAGCCGAAATGAGGCCTTGAGGCTGAAGAAGAAGATGGAGGGTGACCTCAATGAGATGGAGATCCAGCTGAGCCATGCCAACCGTACGGCAGCTGAGGCCCAGAAGCAAGTCAAGGCACTGCAGGGCTATCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000040718:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.485
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(18.3=100),PF045827=Reo_sigmaC=PD(24.5=81.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(11.2=24.3),PF087025=Fib_alpha=PU(40.2=39.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGCCAAAAATCCATCCA
R:
CTTGCGCTCATAGTCAGCCTT
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]