GgaINT0134320 @ galGal3
Intron Retention
Gene
ENSGALG00000003179 | ANGPTL7
Description
NA
Coordinates
chr21:4172413-4173674:+
Coord C1 exon
chr21:4172413-4172607
Coord A exon
chr21:4172608-4173475
Coord C2 exon
chr21:4173476-4173674
Length
868 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TTCTTCACTGTTTATGACAGGAC
3' ss Score
6.95
Exon sequences
Seq C1 exon
GTGTTCTGTGACATGGAGACAGATGGAGGTGGCTGGACTATCATTCAGAGGCGTAAAGTTGGTCTGACGTCTTTCAATAGGGACTGGAAACAATACAGGGAAGGATTTGGCAATATTCGGGGAGATTTTTGGCTGGGAAATGAAAACATCTACCGACTTTCACGACGTCCCACTGTTCTGCGGGTAGAGTTGGAG
Seq A exon
GTAATTAAAAGCTCTCCATTTCAGCAACCAAAGGTTGTTGGCTGTTGCTTTGGTTTTTTTGTTTTGTTTTGTATGGAGTAGTTCTTCCAAAGCAGATACCATCTCTTATTGCTATTGAAGGCCCAAGGAATTTGCATGCTTTAATAATAGAAGGAAGCAGGATGGGCCTAGTGACAGATTCAAGGACAAAGTAAAACCACAGTCTCCAGCAAGTAAAGAAGTCAAGGTTACAAACTTCAATCTCCGTGTAGACCATGTCTCCAGTAATGTGAGCTCTAGAGAATCCTGTATGATCCACTGCAGACAGATCAAACTGTTACCACTGCAGATTTAAACATTCACTCAGGTATCTGATAAAGATGAGGCCAAGTCTTCTACTTTGCAGCAACTCCCTCTGGTTTGTGCACAAGTGAGTTTGCACTGTATTAGCCAAAAAAAAAAAAGATTTCTACTGTCTCCTTTGGGCTTGTTTCTGGTTTGGGTTAGTTTATAGTCACACAACTGTTTTGAGGGATGGGATATGTAAAACAGAAGTGAGCTGCAAGGCTTTATGTCTAGAAGTTGCTCTTTCAGAGAAAAAAAAAAGAAAGAGAGAGACTTGAGGCACACACTATCAAAGGAGTCTGCTGGATGTGAGAGCTACAAACAAGGTTTCCACACATATTTTTTGATACCAGTGCAGAGACTTGGAAATATGGTATCTTTCTTTGCCTTAGAGAAGTCCCATCAGCCTGTTCCTGAGATAGACAAGACTCATAAAAAAGGACTGAGAAAGGACACGCAAGGTGCACTGTATATAAATACAGGCCATGGAGTCTTTTTGTATCCATTCTAATAGGGATTATTTCTTCTTCACTGTTTATGACAG
Seq C2 exon
GACTGGGAAGGTAACATACGCTACGCACAATATAAGCAATTCACCCTGAGCAACGAATTAAACAGCTACCGTCTGTTTGTGGGGAACTACACAGGCAACACAGGACGTGACTCCCTGAGGTACCACAACAACACAGCCTTCAGCACAAAGGACAAAGATAACGACAAGTGCGTGGATGACTGCGCCCAGTTCCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003179:ENSGALT00000035033:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(29.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(30.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGAGGTGGCTGGACTA
R:
GTCATCCACGCACTTGTCGTT
Band lengths:
356-1224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]