MmuINT0015042 @ mm10
Intron Retention
Gene
ENSMUSG00000028989 | Angptl7
Description
angiopoietin-like 7 [Source:MGI Symbol;Acc:MGI:3605801]
Coordinates
chr4:148496493-148497477:-
Coord C1 exon
chr4:148497283-148497477
Coord A exon
chr4:148496692-148497282
Coord C2 exon
chr4:148496493-148496691
Length
591 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
GCTCTGCTCCTCCTTTTCAGGAC
3' ss Score
11.65
Exon sequences
Seq C1 exon
GTGTTCTGTGACATGGAAACTTCAGGAGGAGGCTGGACCATCATCCAGAGACGTAAGAGTGGCCTTGTCTCCTTCTACCAAGACTGGAGACAGTATAAGCAAGGGTTTGGCAGCATCCGAGGTGACTTCTGGCTGGGGAATGAACATATCCACCGGCTCACCAGGCAGCCAAGCCGGCTTCGTGTGGAGCTGGAG
Seq A exon
GTAAGCTCGAGCTGCAAGGCCCCGTCTGGCCCAGGCCCACTGCACACATGGTTCATAGGCATCACCACAGTCTACTCACTCTAGGTGTGCTCAGTCAGTGCAGCAATGCTCCTGAAAGCTTTCTGTTTTTCTGTCTCCAAGCGAGGTCCAGGAAGACCCAGGGCAGAACAGGGTAAATGCATAGTTACTGGGATGGAAAGAAAACACCATCTCCTTTGCTCTGGGATCTTGTTAAGTACAAGCCACAGTGATGCTGTGTGGTGGCCCCTTTAGATGGCTTCAAGCATGATGTCCTCACTTACTCCTACCGCATCTCAGGATGAGATTTAACACAAACCACACATCTGCCCCTTCAGACAGACATGAAGGGTTGCAGACAAGCAATCCAGGCCATACGGTGAGACCAGACCCAAGTTTGCTCTCAGACCTTCGTTTGCTGACTGCTAGCTAACATGGCAACCTGCAATAGTCTTACCAGAGTTCCACCTCTGAAGAAATGTTTAGCCGTGGCGCTCATGAGAGAGGAAGGGACCGAGGTCTGCAGAAACGAATCCTTTATGGTTTCCCTAATGCTCTGCTCCTCCTTTTCAG
Seq C2 exon
GACTGGGAGGGCAATGCACGCTACGCAGAGTATAGCTACTTTGCGTTGGGCAATGAACTGAACAGCTACCGCCTCTTCCTGGGGAACTACAGTGGCAACGTGGGGAAGGACGCCCTCCTCTACCATAACAACACCGTCTTCAGCACCAAGGACAAGGACAACGACAACTGCTTGGACAAGTGCGCACAGCTCCGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028989:ENSMUST00000030840:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(29.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(30.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTTCAGGAGGAGGCTGGA
R:
TCCAAGCAGTTGTCGTTGTCC
Band lengths:
355-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types