GgaINT0134439 @ galGal4
Intron Retention
Gene
ENSGALG00000004568 | CELA2A
Description
chymotrypsin-like elastase family member 2A precursor [Source:RefSeq peptide;Acc:NP_001027562]
Coordinates
chr21:5544620-5545565:+
Coord C1 exon
chr21:5544620-5544748
Coord A exon
chr21:5544749-5545428
Coord C2 exon
chr21:5545429-5545565
Length
680 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
AAATGTGCGTATGACCACAGGTA
3' ss Score
4.52
Exon sequences
Seq C1 exon
TTCTACCAGGAAATATCGAGTGCTTCTTGGAAAATACAACCTAGAAGCTGAGGAGCAAGGATCTGTCACAGCCTCCACAGAAAAAATCATTGTCCATGAGAAATGGAATCGGTTCAGCGTTGCAAGTGG
Seq A exon
GTAAGTTGGTGAAAAGTATTTACTCACCTATAGGAAAACTTCAAAGACTTCAAAGTGTTCGCTCCAGTCCATACCTTTCCTCCTTGAAAGAAGATAAAGAGCTTCCCATATTAATTGCTAATTGATTAATTGCATTTTCAGCTGCCATTCTGCATGTTCATGTTTTGGTGAGAAACTGCTGTTCTATGCAATATTTTCCTTCATAAAGCAGAAGGGAATGAATTGATCAAACAATTTAAACACCACTTTGAACATCTTGCATGAATGGCATAAACGTGGAATATGATTGATAAACGGCATTAGTACCTTTGTAGGGAATTTGAAGGACTCCTGTGCATGCTGGTGGGCTGAGCGCATTAGCAAAGAAACCATCTCATTTTCCAGGTGCCTGTAATTGGTCCTCACATATGCATCTGTTTTTGGTGAAGGGAACCTATAAAGGAAACATTCCAGAGGGCTGCCAGCAGGAAAGTGGGCAGATCTGTAGCGAACAGTCTTTCTGTGCATGGATTTCCCCACTGCTTTAAGGACAGAGGAATCTTTACTGCTTATGCAGTGGCCTTTTTGCTCCCTTGCGTTTCTCTTTTTTAATAATTTCTTCTTGTCATTCTGCTGTGTCTTAACTATTTGCAGTCCTCTTCATCCCCTCAGCCCTCTCATAAATGTGCGTATGACCACAG
Seq C2 exon
GTATGACATTGCTTTGATCAAACTCACCGAACACGTTGAACTGAGTGACAAAATCAAGCTGGCCTGCCTCCCTCCTGCAGAAAGCATCCTGTCATCCAACACTGCCTGCTACGTGACGGGATGGGGAAGACTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004568:ENSGALT00000007270:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAAATATCGAGTGCTTCT
R:
TCTGCAGTCTTCCCCATCCC
Band lengths:
262-942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]