RnoINT0033817 @ rn6
Intron Retention
Gene
ENSRNOG00000013628 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:RGD Symbol;Acc:2548]
Coordinates
chr5:160381167-160381743:-
Coord C1 exon
chr5:160381615-160381743
Coord A exon
chr5:160381304-160381614
Coord C2 exon
chr5:160381167-160381303
Length
311 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGT
5' ss Score
8.79
3' ss Seq
AACCTTTTTACCTGACCTAGGAA
3' ss Score
5.61
Exon sequences
Seq C1 exon
CAACTCTAGGACCTACCGCGTGCTGCTGGGCCGACACAGCCTCTCCACCTCGGAATCCGGCTCACTGGCTGTTCAGGTCTCCAAGCTTGTGGTCCATGAGAAGTGGAACGCTCAAAAGCTCTCCAACGG
Seq A exon
GTATGTTTCTGCCTGGTGCTCTCAGTGGGTAGGGTTGGCGGCAGCACAGAGAGGGGGTCGACACACCCCTCCTCTGCCTCTTCTGTACAGAAGAGAGGGAGCTCTTCCCTCCTAGAAGTGGAGCCACCCCTATCCCACAAAGCTGCCACAGAGGTGGCAATGGTGGAGTTATCAGAGAAGGGAGAAGCAAAGGCCGTGGGAGATCCTGCTACCCTGACAGCTGGGTCAGCCTGGGATCATACATGGGAAATGAGAATGCTAGATAGGAATAGTCAACACCCTTGCTGCTCTAACCTTTTTACCTGACCTAG
Seq C2 exon
GAATGACATTGCCCTGGTCAAACTGGCTAGCCCAGTGGCCCTGACCAGCAAGATCCAGACGGCTTGCCTCCCACCCGCTGGTACCATTCTGCCAAACAACTACCCCTGCTACGTCACAGGCTGGGGCCGGCTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013628:ENSRNOT00000018349:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTCTAGGACCTACCGCGT
R:
CCCAGCCTGTGACGTAGCAG
Band lengths:
254-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]