HsaINT0033081 @ hg19
Intron Retention
Gene
ENSG00000215704 | CELA2B
Description
chymotrypsin-like elastase family, member 2B [Source:HGNC Symbol;Acc:29995]
Coordinates
chr1:15808760-15809895:+
Coord C1 exon
chr1:15808760-15808888
Coord A exon
chr1:15808889-15809758
Coord C2 exon
chr1:15809759-15809895
Length
870 bp
Sequences
Splice sites
5' ss Seq
AGGGTTCGT
5' ss Score
3.88
3' ss Seq
CCGCCTCCGCACTCACCCAGGAA
3' ss Score
5.23
Exon sequences
Seq C1 exon
CTCCTCCGGGATCTACCGCGTGATGCTGGGCCAGCATAACCTCTACGTTGCAGAGTCCGGCTCGCTGGCCGTCAGTGTCTCTAAGATTGTGGTGCACAAGGACTGGAACTCCGACCAGGTCTCCAAAGG
Seq A exon
GTTCGTTTCTATCTGGGTGCACTTGGGGGTGAGGTTGTCAGGGAACAGATGGGGGTCTCACAGAGGCAAAGGTCTCAACCCCACCACACCCCCTCTGCTTTTTCTATAGGGAAGAGAAAGGAGCTCTGGCCTATTAGATGTGGAACCGGCTCCAAAGATGTCTGGGGTGGGGATGTGACCTGGGGAGGGTGAAGCAAAGACTGCCAGAGCGACCTGGGTTTGCTGCCAGTTAAGCCTGCAGGGCCCCTGTCCGCTGAGTGTGTATCTACTTCATGCCAAGTCCTGGGGACACAGAGACAGTGCTGTCGACCCTGTGACTGTCCCTGGAGTAGGACACAATCTCTCCTGCCTTCCCCCTTTCAACAAAGCCCTCCGCATTTTCTTTTTTCTTTTCCTTTTTCTTTTTTTGTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGTAGTGCAGTAGCACAATCTCAGCTCCCTGCAAGCTCCGCCTCCTGGGTTCACACCGTTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGACTACAAGTGCCCACCACCACAGGCCCGGCTAATCTTTTGTATTTTTAGTAGAGACGGAGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACTCGCCTCGGCCTCCCAAAGTGCTGGCATTACAGGCTGGCATTACAGGCTGGCATTACAGGCCACCGTGACTGGCCGACCCTCTACATTTTCAAACATGCCCTGTGGGCCCTGCCGGTCAGAGCAACCTGGGGTAACGTACAGGGAAGATGACAAGGTCTCCAAGCCCTCCAAAGCCCCATAGGGCAGGAAAAGTCAACCCTGTTCTCATGCTCCGCCTCCGCACTCACCCAG
Seq C2 exon
GAACGACATTGCCCTGCTCAAACTGGCTAACCCCGTCTCCCTCACCGACAAGATCCAGCTGGCCTGCCTCCCTCCTGCCGGCACCATTCTACCCAACAACTACCCCTGCTACGTCACGGGCTGGGGAAGGCTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215704-CELA2B:NM_015849:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTACCGCGTGATGCTGG
R:
TCTGCAGCCTTCCCCAGC
Band lengths:
257-1127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)