GgaINT0134440 @ galGal3
Intron Retention
Gene
ENSGALG00000004568 | E1BQL7_CHICK
Description
NA
Coordinates
chr21:5731536-5732455:+
Coord C1 exon
chr21:5731536-5731672
Coord A exon
chr21:5731673-5732309
Coord C2 exon
chr21:5732310-5732455
Length
637 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TCATTTCCGTTACTTCCCAGCAA
3' ss Score
5.98
Exon sequences
Seq C1 exon
GTATGACATTGCTTTGATCAAACTCACCGAACACGTTGAACTGAGTGACAAAATCAAGCTGGCCTGCCTCCCTCCTGCAGAAAGCATCCTGTCATCCAACACTGCCTGCTACGTGACGGGATGGGGAAGACTGCAGA
Seq A exon
GTGAGTAGTGGGAGACGGGCAAAACTGCAAAGCAAAGGCCTTCAGCACTGCCATCTTCCTTGGGATTGACTGGAAAAAGGTTGTTGGTGATGATCACGATCCCCTTAACCCCAAGTTCATCGGGGCCCACTTCACTCGCAATATGAATTTTCTCTGCCCTTCAAGCTTATTTTGCTTGTAATGGGTCTAGTAATGCACTAGAGGGCCCTTTACTAGGTTTTCAGCAGCTGTTCTGACACAAATGTTAACAGCATACAGAATTATCTAATCCTGATACACACTGCTGAGTAACTGGAAAGACACATAAGGAAACAGATGTAAAGAGAGATCCCAGAGGTTTCAGCAGAAGTGTCAGCTCAAGCAGCAGTTCCCAGAGCAGTAAGCAAATTCTGAACAAAGAAGAGCCCTTTGTTTCTCTAACAAAGAGACATTTATAAGTGAAACACAAATTATTGGTAAGTTATGGCCTCTTTTTTTTGATGAAAGAATGCAGCTAAGGAATGAATTATACAGCCCAGATGAAGTTTCTTACCTGGAGGAATAGCATGCAGATCCTGGGAGAAGCTTAGCAGTGCACTTTTGCTCTTCCTTCATTGCCAGCTGGTATCATGACTCCTTCATTTCCGTTACTTCCCAG
Seq C2 exon
CAAATGGAGCTCTCCCAGATGAACTGCAGCAAGGCCTGTTGCTGGTAGTAGATTATGCAACTTGTTCCAAGACCAACTGGTGGGGAAGCACGGTGAAAACCAACATGGTGTGCGCTGGTGGAGATGGAATCACCTCCAGTTGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004568:ENSGALT00000007270:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGCTTTGATCAAACTCACCG
R:
GTTACAACTGGAGGTGATTCCA
Band lengths:
278-915
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]