GgaINT0134971 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:992329-992837:+
Coord C1 exon
chr21:992329-992371
Coord A exon
chr21:992372-992789
Coord C2 exon
chr21:992790-992837
Length
418 bp
Sequences
Splice sites
5' ss Seq
CGGGTGATG
5' ss Score
2.75
3' ss Seq
GGCTATGGGNNNNNNNNNNGGGA
3' ss Score
0
Exon sequences
Seq C1 exon
AGCTGCAGCTGTGGGAATGAGGGCCATTGCCACCCTGTGACGG
Seq A exon
GTGATGAACAGGTGCACCCCCCGGGGAGAAGAGCACAAGAGCGCCAGATAGTCCGGGTTCTCTCTCTGATAAACCCCTATTTCTGTAGAAAACCCCTGGAGGTGGGGCAGGGTTAGTCTGGGATTCGGCTTCCCTGGCATCCCCTGTTCCCATGCTCTCTGTGGCAGGCTGTTGCTGTGCGGGCGTTGGGATACCGGTCTGTGCCAACGTCTTGCCAAGTGCAGGAAACATGCACTGGGAGTGACGAATGCGGTGAACCCTTGCAATGCCCCCTTAAAACGCCGGAATACACTGGCCAGGCAGCTTGGAGATGAGCGCCTAGCAGGTGGTGCTGCAGGGGTTCATTTTGTTCTCCACCCTATGATCCCTCCCACAGGCATCATGGTGGGTGGAAAGGCGGCTATGGGNNNNNNNNNNG
Seq C2 exon
GGACGTGCAGCTGCGCACCCGGCTGGACAGGTCACGACTGCCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=76.5)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(63.8=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]