GgaINT0134973 @ galGal4
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1021410-1021929:+
Coord C1 exon
chr21:1021410-1021541
Coord A exon
chr21:1021542-1021800
Coord C2 exon
chr21:1021801-1021929
Length
259 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
GCTCTTTGCTCTCTCCCCAGGTT
3' ss Score
11.28
Exon sequences
Seq C1 exon
GCTGTGCTGTGGGGCGTTGGGGTCCGGGCTGTGCCAACGTCTGCGAGTGCAGCAGCAGCACCGGGAGCTGCGATGCGGTGACGGGGCAGTGCGCCTGCGATGCCGGCTACACGGGCAGCCGCTGCGAGGAGC
Seq A exon
GTGAGTGTGTGCTGCAGTGTGTTTGGGCTCAGCTTTGTCTCCCACAGCTCTGTGGGAAGCGTTGGTGCCATGGCAGAGGGAATTGCATCCCTGCGATGCTGTCCTGGGGTGGGTGTGTGGGTACATCTGTGAGCGGCGGACCCTCATTTTAAACACGAGGCAGCCATATCCTTACAGATCCCTTTTGTCCCAGCCTGAGCTCCCATTGCAGCACAGCCTCCCAAGGACAGCTTCCCAGTGCTCTTTGCTCTCTCCCCAG
Seq C2 exon
GTTGCCCGGCAGGATGGTTCGGGTTGGGCTGCCGGCGCCGCTGCCAGTGTGAGCACGGGGCTATGTGTGACCACGTCAGTGGGGCATGCACATGTGCTGAGGGCTGGAGGGGGACCTTCTGTGAGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(63.8=66.7)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(34.0=36.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTGTGGGGCGTTG
R:
GGTGCTCACAGAAGGTCCCC
Band lengths:
260-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]