GgaINT0134979 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:996668-997105:+
Coord C1 exon
chr21:996668-996796
Coord A exon
chr21:996797-996973
Coord C2 exon
chr21:996974-997105
Length
177 bp
Sequences
Splice sites
5' ss Seq
CACGTGGGT
5' ss Score
4.46
3' ss Seq
CAATGCCTCTCTCCCTGCAGCCT
3' ss Score
10.17
Exon sequences
Seq C1 exon
CCTGCCTGCCCGGAGCGTTTGGGAAGAGCTGTGCTGAACGCTGTGCCTGTCCCCCCGGAGCACCCTGTGACCACATCACTGGGCAGTGCAGCTGCCCACCGGGCTTCACCGGAGCTGCATGCGAGACAC
Seq A exon
GTGGGTACCCCCGGCACTGCCAGGGGGCTTGGGGAGCATCGGGGGTCATGCCATGGGCACTGCAATGGACAGAGGGGTGTGAGCACGTTGCTTAGCCAGGGGACTGGGGTGGGTTTGCGGTGTCCTTGCATGCTGAGAGGGGGGTTTTGCAGCAGCACAATGCCTCTCTCCCTGCAG
Seq C2 exon
CCTGTCCTCCCGGCACCTTCGGGGAGCGCTGCGCCCAACGCTGCCGCTGTGTGGGACCCACCCAGGACTGCCACCCCATCAGCGGTGTCTGCGTCTGTGCACCCGGCCGCCATGGGCCTGACTGCGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(63.0=65.9)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(34.8=35.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTTTGGGAAGAGCTGTG
R:
CTCGCAGTCAGGCCCATG
Band lengths:
245-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]