BtaINT0091706 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50798808-50799219:+
Coord C1 exon
chr16:50798808-50798936
Coord A exon
chr16:50798937-50799087
Coord C2 exon
chr16:50799088-50799219
Length
151 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACCCCTGCCGCCTCCCCCAGCCT
3' ss Score
7.46
Exon sequences
Seq C1 exon
CCTGCCCACCCAGCTGGTTTGGAGAGGCCTGTGCCCAGCGCTGCCAGTGCCCCCCGGGCGCCGCCTGCCACCACGTCACCGGGGAGTGTCACTGTCCCCCGGGCTTCACGGGGCCCAGCTGTGAGCAAG
Seq A exon
GTGGGTGCTGGATGTGGGCAGGCCTGAGGGCAGTTCAGGCCACATGCGCTTCTGGACTGGGCCCCAGAGCTCTGCCCCCAAGAGGGGCCCGGTGTGAGGGAGGGTGCCTTCTCCGGGCCGGGCCAGGACTGACCCCTGCCGCCTCCCCCAG
Seq C2 exon
CCTGCCCACCTGGCACCTTTGGGGAGCGCTGTGGGCAGCAGTGCCACTGCCCCGGCGAGAACCAGGCCTGCCACCCCGCCTCAGGGACCTGCGCGTGTGCCCCCGGCTACCACGGCGCCGGCTGCCAGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(27.1=29.5),PF0005319=Laminin_EGF=PU(63.0=65.9)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(34.8=35.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGGTTTGGAGAGGC
R:
GTGGCAGGCCTGGTTCTC
Band lengths:
194-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development