GgaINT0134986 @ galGal4
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1026986-1027576:+
Coord C1 exon
chr21:1026986-1027117
Coord A exon
chr21:1027118-1027340
Coord C2 exon
chr21:1027341-1027576
Length
223 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCTCCTCTCTGCCCCACAGAGT
3' ss Score
10.02
Exon sequences
Seq C1 exon
CAGGCTGCGAGGAGGGGACGTATGGGGAGGGATGCCGGCAGCGCTGTGACTGCGTGGGGAACGCACCCTGTGACCGCATCACGGGGCACTGCCTCTGTCCTCCGGGAAAAACCGGCCCCCGCTGTGACTCAG
Seq A exon
GTGAGGCTGAGCAATGAGGTGAGCAGGGAAATGCAAAGGACGTGGGGGGTGGATCAAAATACAGCCCTCCGATGGGTGCAAACGTGTCTTGTTGGAGCTGATGTGTTATGGAAGAGCCCTTTCTGTTTTGTGCGCATCCCATTGGAGAGATGACCCTACCCAACCCAGAGCCTGCCCTGCCACGTTGGGGTAGCACAGCAATCTGCTCCTCTCTGCCCCACAG
Seq C2 exon
AGTGCCCTATGAACCGCTACGGCCCCGACTGCGCACTCACCTGCACCTGTGCCAGCAGCACTCAGTGCAGTGCCCGGACTGGCCGCTGTCACTGCCACCGTGGCTCCATGGGCTCCTCGTGCCGGGAAGGTGAGCCCAGCCCCGTGCTGTGCCGGCCCCGTGTGCTGCCTGCAGCACAAGGGCTGAGTGCTGTCCCTTCTCCTCCAGCTGTGCCCGCCCAGGTGCCCACCAGGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.228
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACTGCGTGGGGAAC
R:
GAGGAGAAGGGACAGCACTCA
Band lengths:
293-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]