HsaINT0101840 @ hg38
Intron Retention
Gene
ENSG00000162591 | MEGF6
Description
multiple EGF like domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr1:3492639-3493797:-
Coord C1 exon
chr1:3493771-3493797
Coord A exon
chr1:3492768-3493770
Coord C2 exon
chr1:3492639-3492767
Length
1003 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCGCCCCCTCCGCCTTGCAGATT
3' ss Score
11.02
Exon sequences
Seq C1 exon
GGCGCTCAGGAGCCACCTGTAACCTGG
Seq A exon
GTGAGTCTGGGGTCCTGCCCAGGAAGGGCGTGGGTGTGGGTCTCCATCAGTGACCAATATTGATTGGTTGGGCCCTACCTGTGCCAGTCCTGGGCTGGCCACCAACCCCTCTTGTTGCCTCTGCACCTGGACTGTGCCCCCTGGGGGGGCTGGAGTCAGCTGCTGGGACATGCGGTACCAAGCATGGCCCTCCTGCTGGAGCCTTAGGCCAGGCCCTGCCGTGTGGCCCCCACAACGTCCCAGGAAGGCCATGGTCATGGGAGGGGGCTCTGGTTGGGTGGAAAGACTTCCCTGATCTGCCAGCTGTGGACTGGGGGACATCAAGGGGGCTGTGGCCCCTCCAGCCCAGAGGGCCCCACCTGAGGATAGGAGGGTCTCACCTGAGGATAGGAGGGACCCACCTGAGGATAGGAGGGGCTCACCTGAGGATAGCAGGGGCTCACCTGAGGATAGGAGGGACCCACCTGAGGATAGGAGGGGCTCACCTGAGGATAAGAGGGGCTCACCTGAGGATAGGAGGGGCTCACCTGAGGATAGGAGGGACCCACCTGAGGATAGGAGGGGCTCACCTGAGGATAGCAGGGGCTCACCTGAGGATAGGAGGGACCCACCTGAGGATAGGAGGGGCTCACCTGCTGGGGCTGCTTACCTGGCCTTGTGGCTCTCAGGCCTGTTGTGCCCTGAGGGGGCATCCCTGAACACTGGCTCCTGTTTGCCCTCCTGGGGCGGGGCAGGAACTCGGTGGTGACTCTGGACGTGTGCCTGGGGCCTGGGCTTTCTCATGCAGGAGCTCACTGGCTGCAGAATGTAGCTGAGGAAGGCAGGGCAGGGACTGTTTACTCCTCAGGGGAAACCGAGGCCCAAGGTCTTAGCTCCCGCACACACCCAGGCAGAAGGCTTCACTCCACCTGGGCTCTGCCGCGGGCCCCTAGGCCCAGGCTCCTTGGCGCGGGGAAGGCAAGGATGATGCTCAGGTTTGTCTCCCGCCCCCTCCGCCTTGCAG
Seq C2 exon
ATTGCAGAAGGGGCCAGTTTGGGCCCAGCTGCACCCTGCACTGTGACTGCGGGGGTGGGGCTGACTGCGACCCTGTCAGTGGGCAGTGTCACTGTGTGGATGGCTACATGGGGCCCACGTGCCGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162591:ENST00000294599:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development