GgaINT0134987 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:999570-1000387:+
Coord C1 exon
chr21:999570-999698
Coord A exon
chr21:999699-999776
Coord C2 exon
chr21:999777-1000387
Length
78 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGCTGTCCCTTCTCCTCCAGCTG
3' ss Score
10.58
Exon sequences
Seq C1 exon
AGTGCCCTATGAACCGCTACGGCCCCGACTGCGCACTCACCTGCACCTGTGCCAGCAGCACTCAGTGCAGTGCCCGGACTGGCCGCTGTCACTGCCACCGTGGCTCCATGGGCTCCTCGTGCCGGGAAG
Seq A exon
GTGAGCCCAGCCCCGTGCTGTGCCGGCCCCGTGTGCTGCCTGCAGCACAAGGGCTGAGTGCTGTCCCTTCTCCTCCAG
Seq C2 exon
CTGTGCCCGCCCAGGTGCCCACCAGGTCCCCAGCGCTGCAGGGGATGGAGCACTACGTCCTGCCACAGCCACAGGGCACTGCACAACTACACAAGCCAGCTGGAGGACTCGTTCCCAAGGCACTCGAGTGACAACCAGCTCATGGCAGATGGGAGCTGGGTGCTGCCTGGGCTGGACATGGGCTGTAGGGCTTCTCTGCGGCTGCTGGCCCTCACCTCGGGGTGTTGGGCACCGGGGTTGGAGGGAGAGGGTTGACATTATGGTTGAAAATAGGTATTTATTCAGTAATATTTATGGCAAGCTGTACCACAGCAGTGCAGGAGCTCTGCAGAGCTGCCACCTGCAGGGGGGAGAGCTGACCAAGGACCAATGCAGACACGGACATATGGGCACAAAGCTGTGGTGGTGGTCCTGAGTGCACAGGGATGGCCCCAGCCCATGGGGGCCAAAGAACTGTCTCCTTTCCAGGTGGAATCCCTTTTAATCTGTAAATAACTTGCCCTTTTTTTAACTATTTCTTTTCTTACTACTTCCTTCATTATTATTATTATTGCTTTAGATATCATTACTGTGAAGAAATAATGTTAATATAAGCACGTAGTGAAGGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCTATGAACCGCTACG
R:
TAGTGCTCCATCCCCTGCAG
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]