MmuINT0097684 @ mm10
Intron Retention
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:154271611-154275713:+
Coord C1 exon
chr4:154271611-154271739
Coord A exon
chr4:154271740-154273807
Coord C2 exon
chr4:154273808-154275713
Length
2068 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTTCTTCCCATGTCCTCAGTGC
3' ss Score
10.56
Exon sequences
Seq C1 exon
ATTGCAGAAGAGGCCGCTTTGGGCCGGGCTGTGCCCTGCGCTGTGATTGTGGGGGTGGGGCTGACTGCGACCCCATCAGTGGGCAGTGCCACTGTGTGGACAGCTACACGGGACCCACTTGCCGGGAAG
Seq A exon
GTGAGTCAGGTTCCCAGAGGAGGAATTGAAGACTCCCATCTCTGGTCAGGAATCCACCCCTTGCCCCAAGACCAAGTGGTGGAGCCTGACCAGTCAGTGAGAAACTTGGCCATCCCTTCCTGGCACCCAGAGTCCACACAGCTCCCGGTGGTGATGAGGAGGCCTCAAGCCACTTCCCATGGCAGGAACAGGTTGCACTGCCAGCCTAGAGCATCAACCCTTTCCCCAGAGTGACCCTGCAGATTACAGTGTGAGCTCACAGATCCATATGCAGGCAGGGATGGGCGATTCAGTATGGGGGGGTGCATACATGAATGCCCATGTATCTGTGAGCAATGATGCATGTTAGCCAGGACATGCAAGTACATCAGTGTGTTGTGAGCTACTGAGTGTGCACACGTGCCAGCATGTCAGAGCAGTGATAGAAGCATGAGAGGGCAACTATGCATGCACTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGCACGTGCTCCAGATATGCGTCCTGCTGGTGCATGCACCCCGGGTGTGTGTGTACTGCAGGTGTGTCCTGCTCATGTGTGCACTCCAGGTCTGTTTGTGAACTCCAGATATGTGTGCACTCCAGGTGTTTATGCATGCTGCAGGTGCATGCACACCAGATGTGTGTGCACTCCAGGTGTGTCCTGCTCATGTGTAAACTCCAGGTGTGTGCACTCCAGGTGTTTATGCATGCTGCAGGTGTATGCACACCAGGTATGTGTGCACTCCAGGTGTGTGTGCACAATCCTCCTGGTGCATGTATGATCTTTCTCAATACCTCAGCAAACTCGGCCTGGGGAGCCAACAAGCGGCACCATAAGGGCTTGGGCTATCCACAGGGGTGCCTTACAGGTGGGAAGTACAGTCCCATAGAGCAAGTGTGCATCTTCCTGGTGTGTGCACACAGTGCATGTTCTCTGGGTCATGCATGGGCTTTAGTTCTGCATTTTATGGGTGAGTATATGTCCCATGTATATATTCTTCAGGTATGTGTGTGCTCCGTGTGTACATACATGGCTTCAGGTCTACCCGTGTGCCCACATCTTTGTGCATATTCTGGTGGTGTCTGTGCACCAGATGTGTGTACTGTGTTGAATCCAAATGCATGTGTTACCTACCTAGGACAGGCATGCATGCTCCAGTCCACGTGTGCACTCATGGTTTATTGTACACTTGTGCCTGAGTGTACCCACATGCAGAGCTGAGGCAGTAGTCCCTTGACCCCCAAGTCCCCGAGGCTCTGCGGGACTGCACCTCCCACCTGCAGGGCAGAGCTGGGGATACCGCACCCCTGTGGATAGCCCAGGCTCTTATGGTGTCCTTGTTGGCTCCCCAGGCCCAGTCTGCTGAAGGTGTTGAGAAGGATTTCTGCAGAGGGAGAAGGGAGGCTATGTACCTGGTGGGAGGGAGGTGCCTGGGTACATAATGCTACCCACAGTGACCTCCAGTGGTAAAATGTGGTACTACACCCTAGGACATCCCTATGTACATTTAGCATAGACATTTATTTAGCACATCTCTGAAGATAGGACCGTGGGGAGGGCATTGGGAGTCCTGGGGTGGGATTAGCTTAACTTTGGGCAAAGCCTTCCCCAACCAGCCTCAGAACCCTGCTCCAACCCTTCTTGGAGGTTGGCAGAATGGGAGCTGATCAGACCCCCCCCTCCCCCCAAATGCTTACAGTAAAGTGGAGAAGGACCTGCTGGTGGACATGTGGGGTCCCGGTGGGTGTGGGTAACTAATGCCTTACTGCATCATTACTGGGGGCAGCTGTCACCCAGCTAGCTCATGCCCAGCCTAGGTGATAGGTGCTTGCCCAGGGGCTGCTCTTTGGTTAAGCCTGGAGGAGGAGTCCCATACGAGGATGAACATTTTTGCTTCCCTGGACCTTGGAGATGGGGCTGGACCACATGGGGGAGGGGGATGGGCTATTGTCTTTACCAGGCTTTGCTGATGAGGGAAGATGACAATGTTAGCCTGGAATGTGGCTGTTTTGAGGGTTTCCACCCCACCTTATTGCTAAACCTCTTTTCTTCCCATGTCCTCAG
Seq C2 exon
TGCCCACACAGCTGTCCTCTATCAGACCAGCACCCCAGCACTCCAGCAGCAAGGCCATGAAGCACTAACTCAGAGGAACGCCCACAGAGGCCCACTACTGTGTTCCAGCCCAAGGGACCCAGGCCTCTGCTGGTGACTAAGATAGAGGTGGCACTTTTGGATCCACACCTCTTCTGGAAAGCCATGGATTGCTGTGGACAGCTATGGATAGTCATATAGCCACACACCCGGGCTCCATGGTCATGGGGAAGAAGGCCTCCTTTGGACACAAGGAATCCAGGAAGTCGGCTGGGCTTCGGGCCACTGTTTACATGGGGACCCTGCAGGCTGTGCTGTGGAATCCTGGCCCTCTTCAGCGACCTGGGATGGGACCAAGGTGGGAATAGACAAGGCCCCACCTGCCTGCCAGGTCCTTCTGGTGCTAGGCCATGGACTGCTGCAGCCAGCCAACTGTTTACCTGGAAATGTAGTCCAGACCATATTTATATAAGGTATTTATGGGCATCTCCACCTGCCGTTATGGTCCTGGGTCAGCTGGAAGCTGCCTGACCCCAGAACTTAGGCAGTGGCCTGTGGGGTCTCCAGCAAGTGGGATCAAGGGTTTTGTAAAACCCAGTGAGTTAAAGGCACAGTGGTGTCCCCATTGCCTGGGTTTCTGTGCTTTCTGTAGACTCCGTGGGTCCTTCCAAGAGCAGGTGGCCTGAGGGTTCTTGAATGGGAACCTCCTGTACCCCTCTGTAATGACATGCATGTAATGTAATGCTTCAGTCACCTTAGGGTTCTTCCTGACTTCCAGCTCTAGGGCATGAGGCAGTGCCTGTCAAGGTGAATTGTTCCAGAGAACACATTGATGCCTGAGACACCTCCAGAGACTACAGAACAATGTCCCAGAGGGAGCAGGGCAGGGGTAGTGTGGAAGGAAATCCATGCTTAACCAAGCCAGCTGACCCCCTGCCTCAACACAGTGATGGACAGGCAGCATCACAGGAGCCAGGCCTCTGCTCTCACTCAAGCCCCTTGTTTTGGATCTGGGTGGTGGCTGCCTCCTCCCTCTCCCACTGCATCCGAGGCAGCTGAAACCTCCAGGGACACTTCAAAGGCCGCAGTGGTGTGGCCAGTAGTGGGGAGCAAGTCAGTCGGCCACTGTATAGAGACTTAGGTTAAAGCAGAGGGATGGAGCAGAGAGTGGGGTGGAGCGTTGTGTGAATGTGAAGCAGGCAGTATGGGGACGAAGGAGGAATTCTAAAGCACCCAGAGGGAAAAGGGTTTTAAGAATCAGACTGGCCAGAAACTCTACAAGGGAGGGGCTGGCAGCCAGGAAATGGTGGTGATGTCACAGGTATTGAAAATATACAATTATATCCAGCTAAACTATCACCATGCCCACAGGTTCACCCATGTCTAATTTGGAAATATTTTTGGGAAGAGCCTAAGAGACCTCACGGCACACTTCCTACATGGCCATCATGAGGAGAACTGAAATTTTCCTTCTAAACCACAGGTCAACCCCAGGCTGGGTAACTGTGGGGCAGACACAAGGGAAGTCAGAGACAGGGCATCACCGGTCCTGTGACAGGCAGAGAGGCAGCAGCTGTAGCCAGCAGAGGTAGGAGATAGAGAGGCCCACTTTAGCCCACCTGAGGACCAAGGTCCACCCAGGGACAGGAAGGGAAAGAGAAACAGGGATGGAAAAAGCAGGCTAACAGGGCCTGAGCAGATAGTGATCCAGACTTCACTAAGAGTCATATGATCTTGGCTGGCAAGGTGGTTCAGGGGGTTAAGGCCCTTGCTACCACGCCTGACAACCTGACTTAGTTTCCCCTGTGATAGAAGATTAGTGACTTCCACGGGTTGTCCTCTGACCTCCTCATATATACCCCCAATAAATATTGTAATTATTTTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751:ENSMUST00000030897:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.636
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types