HsaINT0101842 @ hg38
Intron Retention
Gene
ENSG00000162591 | MEGF6
Description
multiple EGF like domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr1:3489920-3490959:-
Coord C1 exon
chr1:3490912-3490959
Coord A exon
chr1:3490590-3490911
Coord C2 exon
chr1:3489920-3490589
Length
322 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCTTTTCTCCTTTTCCCCAGCGG
3' ss Score
10.15
Exon sequences
Seq C1 exon
GTGGGCCCCTCCGGCTCCCCGAGAACCCGTCCTTAGCCCAGGGCTCAG
Seq A exon
GTAAGGGGTGTGGGGAATGCCCGTGGGCTTGCCAGGAGGGTGGGTTATGGCAAAGTCAACGAAGAGTGCTTAAGTATAATCTGGGCCCCACAGGGCAGCAGCTGCACCCGGGGCCTTGGGCCCCAGGAATCTGGAGCTCAGAGACCAAGGCTGGGGCCAGAGCTGGGAAGGACAGGCTGGGAAGGATGGGTGGGCCCCACCCACCTGCTGGGCTGAGCTGCTGAAGGGAGGGGTGGGAGGGAGAGGTGCCAACCCAGAACCCAGTCTGTTCTGGGAGCACCCGCCCCACCCTGGACTGGCCCTCTTTTCTCCTTTTCCCCAG
Seq C2 exon
CGGGCACACTGCCCGCCTCCAGCAGACCCACATCCCGGAGCGGTGGACCAGCGAGGCACTAGTAGAGGCAGTCCCGTGGAGCCCGCCTCTCCAGTCCCAGCCAGAGGGGACCCTGGCCTTTGGTGACCACTGAGAAGGACACTTCACGGGCCCAGAGCTCCTGGTACTGCCCTTCCTTTGAGGGCCGTGGAGGGCTGTGGACAGCCCAGCAACCTGTCGCTCTTGGAGGCTGGTGTGGCCTTGAGGAGGGAAGCCTCGCATGGCCGCTGGAAGAGAGGCGCCTCCTGGCCTGGCTCTGCAGAACCCAGGGGCACGCTCTGGGCCTGGGCTGAGGAAGTCCCGCTCTCCCCGCGGCTCTGAGTTGGACTGAGGACAGGTGTGGGCGCCAGTGTGGGTGCAGGCGCAGGTGCAGGCACAGGGCCACTGTCCTCCAGGCAGGCTTTTTGGTGCTAGGCCCTGGGACTGGAAGTCGCCCAGCCCGTATTTATGTAAAGGTATTTATGGGCCACTGCACATGCCCGCTGCAGCCCTGGGATCAGCTGGAAGCTGCCTGTCATCTCCTGCCCAATCCCCAGAAACCCTGATTCAGGTCTGCAGGCTCCTGCGGGCTCACCAGGCTGCTGGCTCCGGTACCATGTAAACCTAGGAAGGTAAAGGAGCAGGCAACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162591:ENST00000294599:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCGAGAACCCGTCCTTA
R:
CCTGGGTTCTGCAGAGCCAG
Band lengths:
342-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development