GgaINT0135568 @ galGal4
Intron Retention
Gene
ENSGALG00000000402 | LOXL2
Description
lysyl oxidase-like 2 [Source:HGNC Symbol;Acc:HGNC:6666]
Coordinates
chr22:1232812-1235391:+
Coord C1 exon
chr22:1232812-1232979
Coord A exon
chr22:1232980-1235225
Coord C2 exon
chr22:1235226-1235391
Length
2246 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTTTCTATCCCCCTGCCCAGGAA
3' ss Score
8.69
Exon sequences
Seq C1 exon
CTGCGCCTGGTTGGTGGTCGCAACCCATACGAGGGCCGGGTGGAGGTGCTGGCGGAACGCAATGGCACGCTGCGTTGGGGCACGGTCTGCAGCCAGGGATGGAGCACCGTGGAGGCCATGGTGGTGTGCAGGCAGCTGGGGCTGGGCTTTGCCAGCCATGCCTTCCAG
Seq A exon
GTGGGTCCCCATAAGAGTGTATTCCTTGCGGTGGCATGGGTGAGGTTGGGTAGAATCGTAGAATCATTATGGTTGGGAACGGCTTTTAAAGGTCTTCAAGATCATCAAGTCCAAATGTCAGCCCATCCCCACCATGCCCACTCATAGAATCATTAAGGTTGGAGAAGACCTCTACGATCACCAAGTCTAATTATTGACCCATCACCACCATGTCCCGAAATAGAACCATGGAATCATTCAGGTGGGAGAAGACCTCTAAGATCACCAACTCTAACCCATCCCCATCACGCCCATAGAATCATTAAGGTTGGAGAAGACCTCTACAATCACCAAGTCCAATTATTGACCCATCTCCACCATGTCCCGAAATAGAACCATGGAATCATTAAGGATGGTAAAGACCTCCGAGATCCCCCAGTCCAACCCCAACTCATCCCCACTGACGGCGTCCCTCAGTGCCACATCTCCATAGCTCTTGGACACCTCCAGGGATGGTGACCTCACTACCTCCCTGGGCAGCCTGTGCCAATGCCTGACCACACTTTCAGAGAAGAAATTTTCCTTAATATCCAACCTGATCCTTGTTCCTCCCTGGGTCAAACTGGGATCTGAGCTGAGTGAAGTCGGAAGCCAATTTCCTCCTGGTGTCAAATCACTGGAAAACAATCGCATTTTGCTCCTGCAGTAACTTATCAGTGCAGCACGTGGTGCAGATGCACGCTAGCCCTCTGGGTTTTTGGTAGCATTTGCTTCTCTGATGACAAATGCCCTTAAGCCTCCCTCCTCATGCATGACCAAGAACAACACTTAAAAGGGATAAAAGCCATCAGCTAACAAGTTTGGGACAACCACAGAGGAATGAAGTGTTCTTTCCCAGCAAAGCTCCTTGGCACAGGGAGCAGCAGCCTGCTGTGCTGGCTGGTAGGAAAGCGAGCAGCAGCCACAGAAATGGGCTGCATGCAGGGGAACAGAATCTTCCCACCCCAGTAAAGGATACAGACCAATCATCCCGGTGCAAGACATGCTCCTGAATTGATGCACCCCTCAAGGATCATAAGGGCAGGCAGCTTTCGCAAGGAAATGCAGAACCTCTGAGCCTTTATTGCAGTTCTTGATGTTGGCACAATGGATTTGGGGCTATCAAAGGAGTTGGCTTCTCTCTGGGAAAGCAGCCCCCCCTTGCTGGAGCTGTTCTCTTGCAAAGTGGTCCCTGAGAATGTAGCTTTGGGGAAAACGTGGCTCACACTGCCACTGAGTAAATAAAATTCAAGCGTGCTTTCATAGATGGAAGGAAAACTATTTTCCCCCAGACAATTGCCAGAAATCCAGAACTTGGGCACAGAGCAAAAAGCAGCACAGAGCATCTCCTCCTGGGGAGCAGAGGCTGTGCCACCCTCCAGCATTTTGGTGCCGTGTTCAATCCACTGAGCTTCTGAGCAAGCCAGGATGCCAGGAGGACATACCAGGCTCCTGAGCAAGCAGGTTGACACCGGTTTTAAGTGTTGCTCATGGCCAGAGAGGGAATGTGGGGTCTGATGCCTTAGGAGGGAGGAGGCTGGAGCTTTGCTGCAAGCTGGTTCCTCCAGCTGACTGCTTGCACAGCTGCCAAGCAGAGCACAAGAGCTGCGGATAGCCACGTCCCTTCAATGCTGGCCTTTCCAGCTCTGTTGACACAGCCCTGAGAGTCCAGTGAGAAACAAGACATTTTTTCCTTTAGCTGAGACTGTTGGTATTTAGAACAGAAAAGGCTCTTATGCATACCCCGGCTGCACCAGCTCTGAGAGCATAAAGCTACACTGTGTGGAACAGGGCAGCCCTGTGTGCAGAGTGTTGCTAACAGGGTTAACAAACAGCCTGTTGCAATGGAAGCAATGGTGCAGATGGGTTCTCTTTTCCTAGAAACGTTTCCAGTTTGGACACTAACGCAAGGACCAGAATTCTTTTTCTTCTTTCTTCCCTTCCCTTCGCCCACACTTTGCCATTGCAGTTTCAATGGGGCTACAGAAGGTTTTGAGAAGGTGAGAGATGCTGACCAGCAGCATCCTGCCTCCATTCCTCTGCACTGACACATACCAACAGCTCCACCAGGAACCCCAATCCCTTAAAAGAGGACACCAAACAAATCTGCATGCTCGTGCATTGGTGTTCCTGGAGGGAGGACACAAGTTATTCACAAGTATACATGCATGTTCCCCCAGCAGCCCATCAAATGGTGTATAAATGCCTCTTTCTATCCCCCTGCCCAG
Seq C2 exon
GAAACCTGGTACTGGCATGGAGATGTCAGTGCTGACAGCGTGGTCATGAGTGGGGTCAAGTGCTCGGGGACGGAGATGTCCCTGGCCCACTGTCGTCATGATGGAGCTGACGTCTCCTGTCCTAGAGGAGGAGGTCGCTTTGGTGCTGGCGTGTCCTGCTCGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000402:ENSGALT00000000548:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(48.6=92.9)
A:
NA
C2:
PF0053013=SRCR=PD(49.5=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]