GgaINT0135570 @ galGal4
Intron Retention
Gene
ENSGALG00000000402 | LOXL2
Description
lysyl oxidase-like 2 [Source:HGNC Symbol;Acc:HGNC:6666]
Coordinates
chr22:1236027-1238409:+
Coord C1 exon
chr22:1236027-1236270
Coord A exon
chr22:1236271-1238293
Coord C2 exon
chr22:1238294-1238409
Length
2023 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GAATTCACCGTGTCTTGCAGGCA
3' ss Score
7.18
Exon sequences
Seq C1 exon
CTGCCCCTGACCTGGTGCTCAATGCCGAACTGGTGGAGCAGACTGCCTACCTGGAGGACCGCCCCATGTTCATGCTGCAGTGTGCACAGGAGGAGAACTGCTTGGCCAGCTCTGCCGTCAACACCTCCGTCACCTCCGGGTACCGCCGCCTGCTCCGCTTCTCCTCCCAGATCCACAACAATGGGCAGTCAGATTTCCGCCCCAAAAATGGTCGCCACGCTTGGGTCTGGCATGACTGCCATCG
Seq A exon
GTGAGTGCTGTTGGGTCCATTGGCCAAACCAACCGTGGGGAGTGGGAACTGAGCAGATGCTGTTAGTCCTGCAGTGATGGGTTGGAATAAGGTTGGTTTCCCTCTAATCTGGGAGCTGAGAAACTCAGTGCACAGCTCTTGTTCTGCCCCTGCTGTAAGATTTGTGCTGCACAGAGCAGCAAATTCTCATGTTTTGCACCCTTCTAGAAGCAGTGTGTGAGCAAAGGGGGATGGAGGTAGCACTGCATCAGCGTCACAGTGCTGCAGAGCTTCAGATGGGGCACGTGTTGGCACACACCTTGCAGCCAGGTTGCTTTTGTGATGTGTGCTGCTAAAGCCTCAGCAGCAGAGAGCCCAAAACAAACAGGAGATGGCAGTTTCAGGAGGAGGAAACCCTCCTGGGTTGCAGTGGGTGCAGTACCTCTGCTTCTGCTCTGGCCTTGGGAGGGGGTATGTATGGGTTCTGCAAGGAGCTGAGCACATCATGGGGTGGGTAAAGGAGGCTTTGGGAGCAATTTGGGAGACTGCATAAGTGAGGTGAGTTTGGGGAGAGGCCAAGAGCCATCTGTGTGCTCAGAACTGGATTCTGTTTATATGGAGGAGGATGAATTCAATTCCTCTTCAATCTTTCCAGTCTGTAAACAGCAGAATGTAAACACCTCTTTGAGTGATTCAGACATACTTCAGAAAGTGAGTCAGACTGGAGACCTCAAACTTCTATCAGAGGCTGCCAAAGGAGACAGCTCACAAGTCAACAGCTTGGAAACGTCCCTTCTCTCCCTGTTGCCTCACCCCATCACTGGGAGCTTCTGTTCAGGAGCCTTTTGATGTGGGAGCAGAACAGAAATGGGAAAGACCATAGCAGGGAGTGAGAGGGGATCGACTTTTGGCACGTGGTGGGTTTGGGTTTTTCTGGTTTTAGAGGAAAGGAGGTAAAACAAAACCTAATCTCTAGAGGAAACATTTCTTCCCCTTCCAGCCTTGCCCCCTTTTTTTTTCTGCAGAAACGTGTGCTGCAATACTATGGGCTGGAAGCTTTGAGCCACAGTTATTTTTACAGCTGGGAAGGGGATGAGCTGTGCCTTGTGCTCAGCGCTGCTGAATTTGGGTTGGCATTGAACTGTGTGGGCACTGCCTCACTCCCGAGCCACACAGATGGGCTATGGTGTGTCTCAGGGTTTCAGGACCTCCTGTTCCCAACAAGTGCTGTGGGTTCTCTCCCTGTCCCAAGGCTGGGATCGTGTGGAGTGTCACCAGCCTTGACCCCATGTTGCACCTTGCTTCCTCCCATTGACCTCAGCGCAGGTTCAGCGTTCTGCTGAACCAGCATTGTGGCACAGAACAAGTGGAAGGAACAGGTCAGCATCACCCAAGCCCTGCAGGGGGTCTGACTTTCCTAATTACGGGCCTAACCTTGCTAATTATGGGTCTACAGCCCATCTTGTGTGCTCTCTCTGCTGCATTCCTGCTGGCAGTGCAGCCCAGGTTGAGTTGATGCTAACACCTCCCCGTTTCAAGCTATGGGATGGAAGGTGTGTGATGCCAGCTGTCGCGTTGTTTAGCTCCCCATGAAGTGAGTGCTGAGAAGATGCTTCCACCTGTCATTCGTTTTGAGGAGGGGGAAGAAAATGGAAAATAGGTTGATAATCTGAGTAGACCCTGTGCTGCTTACAGCCTGCTGGTACGAAGCATCTGAAATGCTTCTCGTCGTAGTGATGACAGTGCACTCGAAATGACAGTCTGGCTGCTGCTGCTGCTGCTGCCATTGCAAAGCAGTGTGTGATCCGATGAAGGCTCTCCCTGGAACTGCTCCAGCACCTGCTATGCGAACCAGCCCTGGGCTGGGAGCCAGCACACGGTGCCACATAGGATGGTGCCCAGAGGAAGGTTTCCTGGCTGTGGTTTCTCTTCTTCTGCTCCTTCTGGTCCCAAGCACTTTGCATTGTTTCTATTCCCCCACGCAGCCCCCGAGGGGCAGTAATTAAAGAGCTGCTTCCCTTAATGAATTCACCGTGTCTTGCAG
Seq C2 exon
GCATTACCACAGCATGGAGGTCTTCACCCACTATGACCTACTGAACCTCAATGGGACCAAAGTAGCTGAAGGACACAAAGCCAGCTTCTGTCTGGAAGACACCGAATGTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000402:ENSGALT00000000548:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0118612=Lysyl_oxidase=PU(38.7=96.3)
A:
NA
C2:
PF0118612=Lysyl_oxidase=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]